X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=bbtk_creaVtk_PKG%2Fsrc%2FbbcreaVtkReadMHDPlane.cxx;h=020eb5f9080d0aecff4b85e807382e57172c7029;hb=ef9f90810fcc3800acac54a104f14ff505135fd3;hp=b842e8dca42f643bc2cdfdd9d4deae1fc212e86d;hpb=c63a1475156e6df7ba66ccd385f0924e7c3c032d;p=creaVtk.git

diff --git a/bbtk_creaVtk_PKG/src/bbcreaVtkReadMHDPlane.cxx b/bbtk_creaVtk_PKG/src/bbcreaVtkReadMHDPlane.cxx
index b842e8d..020eb5f 100644
--- a/bbtk_creaVtk_PKG/src/bbcreaVtkReadMHDPlane.cxx
+++ b/bbtk_creaVtk_PKG/src/bbcreaVtkReadMHDPlane.cxx
@@ -32,6 +32,41 @@ BBTK_BLACK_BOX_IMPLEMENTATION(ReadMHDPlane,bbtk::AtomicBlackBox);
 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
 //===== 
 
+
+vtkImageData* ReadMHDPlane::CreateDefaultImage()
+{
+	int i;
+	int sizeX, sizeY, sizeZ;
+	sizeX = 200;
+	sizeY = sizeX;
+	sizeZ = 1;
+	vtkImageData *newImage = vtkImageData::New();
+   	newImage->Initialize();
+   	newImage->SetSpacing( 1,1,1 );
+   	newImage->SetDimensions(  sizeX,sizeY,sizeZ );
+   	newImage->SetExtent(0,  sizeX-1,0,sizeY-1,0,sizeZ-1 );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+   	newImage->SetWholeExtent(0,  sizeX-1,0,sizeY-1,0,sizeZ-1 );
+   	newImage->SetScalarTypeToUnsignedChar();
+   	newImage->SetNumberOfScalarComponents(1);
+   	newImage->AllocateScalars();
+   	newImage->Update();
+#else
+   	newImage->AllocateScalars(VTK_UNSIGNED_CHAR,1);
+#endif
+
+	memset ( (void*)newImage->GetScalarPointer(), 0, sizeX*sizeY*1 );
+   	for (i=0; i<sizeX; i++)
+   	{
+		newImage->SetScalarComponentFromDouble(i,i,0, 0, 255 );
+		newImage->SetScalarComponentFromDouble(i,sizeY-1-i,0, 0, 255 );
+  	} // for i
+	return newImage;
+} 
+
+
 void ReadMHDPlane::ReadNormalMHD()
 {
 // THE MAIN PROCESSING METHOD BODY
@@ -50,6 +85,10 @@ void ReadMHDPlane::ReadNormalMHD()
 //    std::cout << "Output value = " <<bbGetOutputOut() << std::endl;
 
 	std::string inputfilename;
+	int slice;
+	int width;
+	long long dataSize;
+
 
 	if (bbGetInputDirectionPlane()=="XY")
 	{
@@ -59,7 +98,6 @@ void ReadMHDPlane::ReadNormalMHD()
 
 	if ((bbGetInputDirectionPlane()=="YZ") || (bbGetInputDirectionPlane()=="ZX"))
 	{
-
 		//-- Split FileName
   		std::size_t found		=	bbGetInputFileName().find_last_of("/\\");
 		std::string path		=	bbGetInputFileName().substr(0,found+1);
@@ -69,8 +107,6 @@ void ReadMHDPlane::ReadNormalMHD()
 #else
 		path=path+"YZ_ZX/";
 #endif
-	
-	
 		if (bbGetInputDirectionPlane()=="YZ") 
 		{ 
 			inputfilename = path+filename+"_YZ.mhd";  
@@ -82,8 +118,14 @@ void ReadMHDPlane::ReadNormalMHD()
 		} // XZ
 	} // if YZ || XZ
 
+	width = bbGetInputWidth();
+	if (width<=0 ) { width=1; }
+
+	slice = bbGetInputSlice();
+	if (slice<0 ) { slice=0; }
+
 	vtkImageData *newImage;
-	long long int newHeaderSize;
+	long long newHeaderSize;
     std::string newFileName=inputfilename+"-OneSlice";
 
     int sx,sy,sz;
@@ -99,20 +141,49 @@ void ReadMHDPlane::ReadNormalMHD()
     	{
     	    strcpy(mystring,"\n");
    			fgets(mystring,250,ffIn);
-   	     	if (strncmp("NDims",mystring,5)==0) {strcpy(mystring,"NDims = 2\n");}
+   	     	if (strncmp("NDims",mystring,5)==0) 
+			{
+				if (width==1) 
+				{ 
+					strcpy(mystring,"NDims = 2\n"); 
+				} else {
+					strcpy(mystring,"NDims = 3\n"); 
+				}
+			}
         	if (strncmp("DimSize",mystring,6)==0) 
 			{
 				sscanf(mystring,"%s %s %d %d %d",strTmp, strTmp, &sx, &sy,&sz);
-				sprintf(mystring,"DimSize = %d %d\n",sx,sy);
-    			newHeaderSize = (long long int)sx*(long long int)sy*(long long int)bbGetInputSlice();
+
+				if (width==1) 
+				{ 
+					sprintf(mystring,"DimSize = %d %d\n",sx,sy);
+				} else {
+					sprintf(mystring,"DimSize = %d %d %d\n",sx,sy,width);
+				}
+
+    			newHeaderSize = (long long int)sx*(long long int)sy*(long long int)slice;
 				if (bbGetInputSlice()>=sz) {ok=false;}
 			} // if
-        	if (strncmp("ElementType = MET_CHAR",mystring,22)==0) 	{ newHeaderSize=newHeaderSize*1; }
-        	if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) 	{ newHeaderSize=newHeaderSize*1; }
-        	if (strncmp("ElementType = MET_USHORT",mystring,24)==0) { newHeaderSize=newHeaderSize*2; }
-        	if (strncmp("ElementType = MET_SHORT",mystring,23)==0) 	{ newHeaderSize=newHeaderSize*2; }
-        	if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) 	{ newHeaderSize=newHeaderSize*4; }
-        	if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) 	{ newHeaderSize=newHeaderSize*4; }
+        	if (strncmp("ElementType = MET_CHAR",mystring,22)==0) 			{ dataSize=sizeof(char); 			}
+        	if (strncmp("ElementType = VTK_CHAR",mystring,22)==0) 			{ dataSize=sizeof(char); 			}
+        	if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) 			{ dataSize=sizeof(unsigned char); 	}
+        	if (strncmp("ElementType = VTK_UNSIGNED_CHAR",mystring,31)==0) 	{ dataSize=sizeof(unsigned char); 	}
+        	if (strncmp("ElementType = MET_USHORT",mystring,24)==0) 		{ dataSize=sizeof(unsigned short);	}
+        	if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { dataSize=sizeof(unsigned short);	}
+        	if (strncmp("ElementType = MET_SHORT",mystring,23)==0) 			{ dataSize=sizeof(short); 			}
+        	if (strncmp("ElementType = VTK_SHORT",mystring,23)==0) 			{ dataSize=sizeof(short); 			}
+        	if (strncmp("ElementType = MET_UINT",mystring,22)==0) 			{ dataSize=sizeof(unsigned int);	}
+        	if (strncmp("ElementType = VTK_UNSIGNED_INT",mystring,30)==0) 	{ dataSize=sizeof(unsigned int);	}
+        	if (strncmp("ElementType = MET_INT",mystring,21)==0) 			{ dataSize=sizeof(int);				}
+        	if (strncmp("ElementType = VTK_INT",mystring,21)==0) 			{ dataSize=sizeof(int);				}
+        	if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) 			{ dataSize=sizeof(float); 			}
+        	if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) 			{ dataSize=sizeof(float); 			}
+        	if (strncmp("ElementType = MET_LONG",mystring,22)==0) 			{ dataSize=sizeof(long); 			}
+        	if (strncmp("ElementType = VTK_LONG",mystring,22)==0) 			{ dataSize=sizeof(long); 			}
+        	if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0) 		{ dataSize=sizeof(double); 			}
+        	if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0) 		{ dataSize=sizeof(double); 			}
+			newHeaderSize=newHeaderSize*dataSize;
+
         	if (strncmp("Offset",mystring,6)==0) {strcpy(mystring,"Offset = 0 0 0\n");}
         	if (strncmp("HeaderSize",mystring,10)==0) {strcpy(mystring,"");}
         	if (strncmp("ElementDataFile",mystring,15)==0) 
@@ -138,35 +209,26 @@ void ReadMHDPlane::ReadNormalMHD()
 
 	if (ok==false)
 	{
-		int i;
-		int sizeX, sizeY, sizeZ;
-		sizeX = 200;
-		sizeY = sizeX;
-		sizeZ = 1;
-		newImage = vtkImageData::New();
-   		newImage->Initialize();
-   		newImage->SetScalarTypeToUnsignedChar();
-   		newImage->SetSpacing( 1,1,1 );
-   		newImage->SetDimensions(  sizeX,sizeY,sizeZ );
-   		newImage->SetWholeExtent(0,  sizeX-1,0,sizeY-1,0,sizeZ-1 );
-   		newImage->SetExtent(0,  sizeX-1,0,sizeY-1,0,sizeZ-1 );
-   		newImage->SetNumberOfScalarComponents(1);
-   		newImage->AllocateScalars();
-   		newImage->Update();
-		memset ( (void*)newImage->GetScalarPointer(), 0, sizeX*sizeY*1 );
-   		for (i=0; i<sizeX; i++)
-   		{
-			newImage->SetScalarComponentFromDouble(i,i,0, 0, 255 );
-			newImage->SetScalarComponentFromDouble(i,sizeY-1-i,0, 0, 255 );
-  		} // for i
+		newImage=CreateDefaultImage();
 	} // if ok
 
 	bbSetOutputOut( newImage );
-
 }
 
+
+
+
+
 void ReadMHDPlane::Read64lseek()
 {
+	int 		slice;
+	int 		width;
+
+	width = bbGetInputWidth();
+	if (width<=0 ) { width=1; }
+
+	slice = bbGetInputSlice();
+	if (slice<0 ) { slice=0; }
 
 	int 		dimX=-1,dimY=-1,dimZ=-1;
 	int 		dim=-1;
@@ -176,7 +238,8 @@ void ReadMHDPlane::Read64lseek()
 	float 		ox=-1,oy=-1,oz=-1;
 	long int 	headersize=0;
 
-	vtkImageData *newImage;
+	vtkImageData *newImage=NULL;
+	int imageType;
 
 	char mystring[250];
 	char strTmp[30];
@@ -184,8 +247,6 @@ void ReadMHDPlane::Read64lseek()
 	FILE *ffIn	= fopen(bbGetInputFileName().c_str(),"r");
 	long long dataSize;
 
-
-
 	if (ffIn!=NULL)
 	{
 		newImage = vtkImageData::New();
@@ -197,23 +258,32 @@ void ReadMHDPlane::Read64lseek()
    	     	if (strncmp("NDims",mystring,5)==0) 			{ sscanf(mystring,"%s %s %d"		,strTmp, strTmp, &dim); 				}
         	if (strncmp("DimSize",mystring,6)==0) 			{ sscanf(mystring,"%s %s %d %d %d"	,strTmp, strTmp, &dimX, &dimY,&dimZ);	} 
 			if (strncmp("ElementType",mystring,11)==0) 		{ sscanf(mystring,"%s %s %s"		,strTmp, strTmp, strTmp2); formattype=strTmp2;			}
-			if (strncmp("ElementSpacing",mystring,11)==0) 	{ sscanf(mystring,"%s %s %f %f %f"	,strTmp, strTmp, &spcX,&spcY,&spcZ);	}
+			if (strncmp("ElementSpacing",mystring,14)==0) 	{ sscanf(mystring,"%s %s %f %f %f"	,strTmp, strTmp, &spcX,&spcY,&spcZ);	}
+			if (strncmp("ElementSize",mystring,11)==0) 		{ sscanf(mystring,"%s %s %f %f %f"	,strTmp, strTmp, &spcX,&spcY,&spcZ);	}
          	if (strncmp("Offset",mystring,6)==0) 			{ sscanf(mystring,"%s %s %f %f %f"	,strTmp, strTmp, &ox, &oy, &oz);		}
         	if (strncmp("HeaderSize",mystring,10)==0) 		{ sscanf(mystring,"%s %s %ld"		,strTmp, strTmp, &headersize);			}
 			if (strncmp("ElementDataFile",mystring,15)==0) 	{ sscanf(mystring,"%s %s %s"		,strTmp, strTmp, strTmp2); elementdatafile=strTmp2;		}
 
-        	if (strncmp("ElementType = MET_CHAR",mystring,22)==0) 	{ newImage->SetScalarTypeToChar(); 			dataSize=sizeof(char); 			}
-        	if (strncmp("ElementType = VTK_CHAR",mystring,22)==0) 	{ newImage->SetScalarTypeToChar(); 			dataSize=sizeof(char); 			}
-        	if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) 	{ newImage->SetScalarTypeToUnsignedChar();	dataSize=sizeof(unsigned char); }
-        	if (strncmp("ElementType = VTK_UNSIGNED_CHAR",mystring,31)==0) 	{ newImage->SetScalarTypeToUnsignedChar();	dataSize=sizeof(unsigned char); }
-        	if (strncmp("ElementType = MET_USHORT",mystring,24)==0) { newImage->SetScalarTypeToUnsignedShort();	dataSize=sizeof(unsigned short);}
-        	if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { newImage->SetScalarTypeToUnsignedShort();	dataSize=sizeof(unsigned short);}
-        	if (strncmp("ElementType = MET_SHORT",mystring,23)==0) 	{ newImage->SetScalarTypeToShort();			dataSize=sizeof(short); 		}
-        	if (strncmp("ElementType = VTK_SHORT",mystring,23)==0) 	{ newImage->SetScalarTypeToShort();			dataSize=sizeof(short); 		}
-        	if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) 	{ newImage->SetScalarTypeToFloat();			dataSize=sizeof(float); 		}
-        	if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) 	{ newImage->SetScalarTypeToFloat();			dataSize=sizeof(float); 		}
-        	if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0) { newImage->SetScalarTypeToDouble();		dataSize=sizeof(double); 		}
-        	if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0) { newImage->SetScalarTypeToDouble();		dataSize=sizeof(double); 		}
+
+
+			if (strncmp("ElementType = MET_CHAR",mystring,22)==0) 			{ imageType =VTK_CHAR; 			 dataSize=sizeof(char); 		 }
+			if (strncmp("ElementType = VTK_CHAR",mystring,22)==0) 			{ imageType =VTK_CHAR; 			 dataSize=sizeof(char); 		 }
+			if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) 			{ imageType =VTK_UNSIGNED_CHAR;	 dataSize=sizeof(unsigned char); }
+			if (strncmp("ElementType = VTK_UNSIGNED_CHAR",mystring,31)==0) 	{ imageType =VTK_UNSIGNED_CHAR;	 dataSize=sizeof(unsigned char); }
+			if (strncmp("ElementType = MET_USHORT",mystring,24)==0) 		{ imageType =VTK_UNSIGNED_SHORT; dataSize=sizeof(unsigned short);}
+			if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { imageType =VTK_UNSIGNED_SHORT; dataSize=sizeof(unsigned short);}
+			if (strncmp("ElementType = MET_SHORT",mystring,23)==0) 			{ imageType =VTK_SHORT;			 dataSize=sizeof(short); 		 }
+			if (strncmp("ElementType = VTK_SHORT",mystring,23)==0) 			{ imageType =VTK_SHORT;			 dataSize=sizeof(short); 		 }
+			if (strncmp("ElementType = MET_UINT",mystring,22)==0) 			{ imageType =VTK_UNSIGNED_INT;	 dataSize=sizeof(unsigned int);	 }
+			if (strncmp("ElementType = VTK_UNSIGNED_INT",mystring,30)==0) 	{ imageType =VTK_UNSIGNED_INT;	 dataSize=sizeof(unsigned int);	 }
+			if (strncmp("ElementType = MET_INT",mystring,21)==0) 			{ imageType =VTK_INT;			 dataSize=sizeof(int);			 }
+			if (strncmp("ElementType = VTK_INT",mystring,21)==0) 			{ imageType =VTK_INT;			 dataSize=sizeof(int);			 }
+			if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) 			{ imageType =VTK_FLOAT;			 dataSize=sizeof(float); 		 }
+			if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) 			{ imageType =VTK_FLOAT;			 dataSize=sizeof(float); 		 }
+			if (strncmp("ElementType = MET_LONG",mystring,22)==0) 			{ imageType =VTK_LONG;			 dataSize=sizeof(long); 		 }
+			if (strncmp("ElementType = VTK_LONG",mystring,22)==0) 			{ imageType =VTK_LONG;			 dataSize=sizeof(long); 		 }
+			if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0) 		{ imageType =VTK_DOUBLE;		 dataSize=sizeof(double); 		 }
+			if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0) 		{ imageType =VTK_DOUBLE;		 dataSize=sizeof(double); 		 }
 
     	} // while
    		fclose(ffIn);
@@ -221,15 +291,15 @@ void ReadMHDPlane::Read64lseek()
    		newImage->Initialize();
 
 
-		int fd;
-		long long ret;
+		int 		fd;
+		long long 	ret;
 		std::size_t found;
 		std::string filename;
-		found					=	bbGetInputFileName().find_last_of("/\\");
+		found					= bbGetInputFileName().find_last_of("/\\");
 		filename 				= bbGetInputFileName().substr(0,found+1) + elementdatafile ;
-		long long pos;
+		long long 	pos;
 
-		long long lsize			= dimX*dimY*1 *dataSize;
+		long long lsize			= dimX*dimY*width *dataSize;
 
 
 #if defined(_WIN32)
@@ -239,24 +309,34 @@ void ReadMHDPlane::Read64lseek()
 #endif // defined(_WIN32)
 
 
-
 		if (fd < 0)
 		{
-			printf("EED ReadMHDPlane::Read64lseek \n");
+			printf("EED ReadMHDPlane::Read64lseek   WARNNING! raw file not exist\n");
 			fprintf(stderr, "%s\n", strerror(errno));
-			exit(1);
-		}
+			newImage=CreateDefaultImage();
+//			exit(1);
+		} 	
+		
 
-		if (bbGetInputDirectionPlane()=="XY") 
+		if ((bbGetInputDirectionPlane()=="XY") && (fd>=0)) 
 		{ 
 	   		newImage->SetSpacing( spcX,spcY,spcZ );
-	   		newImage->SetDimensions(  dimX,dimY,1 );
-	   		newImage->SetWholeExtent(0,  dimX-1,0,dimY-1,0,0 );
-	   		newImage->SetExtent(0,  dimX-1,0,dimY-1,0,0 );
+	   		newImage->SetDimensions(  dimX,dimY,width );
+	   		newImage->SetExtent(0,  dimX-1,0,dimY-1,0,width-1 );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+	   		newImage->SetWholeExtent(0,  dimX-1,0,dimY-1,0,width-1 );
 	   		newImage->SetNumberOfScalarComponents(1);
+	   		newImage->SetScalarType(imageType);
 	   		newImage->AllocateScalars();
 	   		newImage->Update();
-			pos = dimX*dimY*(long long)bbGetInputSlice()*dataSize;
+#else
+	   		newImage->AllocateScalars( imageType,1 );
+#endif
+
+
+			pos = dimX*dimY*(long long)slice*dataSize;
 #if defined(_WIN32)
 			if (_lseeki64( fd, pos, SEEK_SET ) < 0)
 #else
@@ -275,95 +355,132 @@ void ReadMHDPlane::Read64lseek()
 			}
 		}  // if PLANE XY
 
-		if (bbGetInputDirectionPlane()=="XZ") 
+		if ((bbGetInputDirectionPlane()=="XZ") && (fd>=0))
 		{ 
-			long long int j;
 	   		newImage->SetSpacing( spcX,spcZ,spcY );
-	   		newImage->SetDimensions(  dimX,dimZ,1 );
-	   		newImage->SetWholeExtent(0,  dimX-1,0,dimZ-1,0,0 );
-	   		newImage->SetExtent(0,  dimX-1,0,dimZ-1,0,0 );
+	   		newImage->SetDimensions(  dimX,dimZ,width );
+	   		newImage->SetExtent(0,  dimX-1,0,dimZ-1,0,width-1 );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+	   		newImage->SetWholeExtent(0,  dimX-1,0,dimZ-1,0,width-1 );
 	   		newImage->SetNumberOfScalarComponents(1);
+	   		newImage->SetScalarType(imageType);
 	   		newImage->AllocateScalars();
 	   		newImage->Update();
-			long long sizeBytesPlane = dimX*dimY*dataSize;
-			pos = dimX*(long long int)bbGetInputSlice()*dataSize;
-			char *pImage = (char*)(newImage->GetScalarPointer());
-			for (j=0;j<dimZ;j++)
-			{
-#if defined(_WIN32)
-				if (_lseeki64( fd, pos + j*sizeBytesPlane , SEEK_SET ) < 0)
 #else
-				if (lseek64(fd, pos + j*sizeBytesPlane , SEEK_SET) < 0) 
-#endif // defined(_WIN32)
-				{
-					printf("EED ReadMHDPlane::Read64lseek \n");
-					fprintf(stderr, "Failed seeking to %lld, %s\n", pos, strerror(errno));
-					exit(1);
-				}
+	   		newImage->AllocateScalars( imageType, 1);
+#endif
 
-				if ((ret = read(fd, pImage , dimX*dataSize)) < 0) 
-				{
-					fprintf(stderr, "Failed reading: %s\n", strerror(errno));
-					exit(1);
-				}
-				pImage = pImage+dimX*dataSize;
-			} // for j
+			int iWidth;
+			for (iWidth=0;iWidth<width;iWidth++)
+			{
+				copy_XZ_plane(fd,newImage,slice+iWidth,iWidth,dimX,dimY,dimZ,dataSize);
+			}
 		}  // if PLANE XZ
 
-
-		if (bbGetInputDirectionPlane()=="YZ") 
+		if ((bbGetInputDirectionPlane()=="YZ") && (fd>=0))
 		{ 
-			long long int j;
-			long long int i;
 	   		newImage->SetSpacing( spcY,spcZ,spcX );
-	   		newImage->SetDimensions(  dimY,dimZ,1 );
-	   		newImage->SetWholeExtent(0,  dimY-1,0,dimZ-1,0,0 );
-	   		newImage->SetExtent(0,  dimY-1,0,dimZ-1,0,0 );
+	   		newImage->SetDimensions(  dimY,dimZ,width );
+	   		newImage->SetExtent(0,  dimY-1,0,dimZ-1,0,width-1 );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+	   		newImage->SetWholeExtent(0,  dimY-1,0,dimZ-1,0,width-1 );
 	   		newImage->SetNumberOfScalarComponents(1);
+	   		newImage->SetScalarType(imageType);
 	   		newImage->AllocateScalars();
 	   		newImage->Update();
-			long long sizeBytesPlane = dimX*dimY*dataSize;
-			char *pImage;
-			for (j=0;j<dimZ;j++)
+#else
+	   		newImage->AllocateScalars( imageType ,1 );
+#endif
+
+			int iWidth;
+			for (iWidth=0;iWidth<width;iWidth++)
 			{
-				for (i=0;i<dimY;i++)
-				{
-					pos = ((long long int)bbGetInputSlice() + i*dimX + j*dimX*dimY)*dataSize ;
+				copy_YZ_plane(fd,newImage,slice+iWidth,iWidth,dimX,dimY,dimZ,dataSize);
+			}
+
+		}  // if PLANE YZ	
 #if defined(_WIN32)
-					if (_lseeki64( fd, pos , SEEK_SET ) < 0)
+		_close (fd);
 #else
-					if (lseek64(fd, pos , SEEK_SET) < 0) 
+		close (fd);
 #endif // defined(_WIN32)
-					{
-						printf("EED ReadMHDPlane::Read64lseek \n");
-						fprintf(stderr, "Failed seeking to %lld, %s\n", pos, strerror(errno));
-						exit(1);
-					}
-
-					pImage=(char*)(newImage->GetScalarPointer(i, j,0 ));
-					if ((ret = read(fd, pImage , dataSize)) < 0) 
-					{
-						fprintf(stderr, "Failed reading: %s\n", strerror(errno));
-						exit(1);
-					}
-				}
-			} // for j
-		}  // if PLANE YZ
+	} else {
+		newImage=CreateDefaultImage();
+	} // if  ffIn
+
+	bbSetOutputOut( newImage );
+}
+
 
-	
+void ReadMHDPlane::copy_YZ_plane(int fd,vtkImageData *newImage,int slice,int iWidth,int dimX,int dimY,int dimZ,int dataSize)
+{
+	long long int j;
+	long long int i;
+	long long 	ret;
+	long long 	pos;
+	long long sizeBytesPlane = dimX*dimY*dataSize;
+	char *pImage;
+	for (j=0;j<dimZ;j++)
+	{
+		for (i=0;i<dimY;i++)
+		{
+			pos = ((long long int)slice+iWidth + i*dimX + j*dimX*dimY)*dataSize ;
 #if defined(_WIN32)
-		_close (fd);
+			if (_lseeki64( fd, pos , SEEK_SET ) < 0)
 #else
-		close (fd);
+			if (lseek64(fd, pos , SEEK_SET) < 0) 
 #endif // defined(_WIN32)
+			{
+				printf("EED ReadMHDPlane::Read64lseek \n");
+				fprintf(stderr, "Failed seeking to %lld, %s\n", pos, strerror(errno));
+				exit(1);
+			}
 
-		bbSetOutputOut( newImage );
-	} // if
+			pImage=(char*)(newImage->GetScalarPointer(i, dimZ-1-j,iWidth ));
+			if ((ret = read(fd, pImage , dataSize)) < 0) 
+			{
+				fprintf(stderr, "Failed reading: %s\n", strerror(errno));
+				exit(1);
+			}
+			} // for i
+		} // for j
+}
 
 
+void ReadMHDPlane::copy_XZ_plane(int fd,vtkImageData *newImage,int slice,int iWidth,int dimX,int dimY,int dimZ,int dataSize)
+{
+	long long int j;
+	long long 	ret;
+	long long 	pos;
+	pos = dimX*(long long int)slice*dataSize;
+	long long sizeBytesPlane = dimX*dimY*dataSize;
+	char *pImage = (char*)( newImage->GetScalarPointer(0,0,iWidth) );
+	for (j=dimZ-1;j>=0;j--)
+	{
+#if defined(_WIN32)
+		if (_lseeki64( fd, pos + j*sizeBytesPlane , SEEK_SET ) < 0)
+#else
+		if (lseek64(fd, pos + j*sizeBytesPlane , SEEK_SET) < 0) 
+#endif // defined(_WIN32)
+		{
+			printf("EED ReadMHDPlane::Read64lseek \n");
+			fprintf(stderr, "Failed seeking to %lld, %s\n", pos, strerror(errno));
+			exit(1);
+		}
+
+		if ((ret = read(fd, pImage , dimX*dataSize)) < 0) 
+		{
+			fprintf(stderr, "Failed reading: %s\n", strerror(errno));
+			exit(1);
+		}
+		pImage = pImage+dimX*dataSize;
+	} // for j
 }
 
 
+
 void ReadMHDPlane::Process()
 {
 	if (bbGetInputType()==0)
@@ -388,6 +505,7 @@ void ReadMHDPlane::bbUserSetDefaultValues()
    bbSetInputFileName("");
    bbSetInputSlice(0);
    bbSetInputType(1);
+   bbSetInputWidth(1);
    bbSetInputDirectionPlane("XY");
   
 }