X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=bin%2F1D_CreaPhase.sh;h=f9ef57905d311401e101f123617c2a402d07ccfe;hb=HEAD;hp=0e0e6c2ce757f26aa7b52a3bd8de7b3ba314024f;hpb=4fd73b272bdfeb5a83cf2fb41491ecd78c37e9c6;p=vip-workflow-creaphase.git

diff --git a/bin/1D_CreaPhase.sh b/bin/1D_CreaPhase.sh
index 0e0e6c2..f9ef579 100755
--- a/bin/1D_CreaPhase.sh
+++ b/bin/1D_CreaPhase.sh
@@ -73,7 +73,9 @@ fi
 
 # Arguments parsing #
 RES=$1
-COMM_LINE=`echo "${@:2:$(($#-2))}"`
+COMM_LINE=`echo "${@:2:$(($#-4))}"`
+MU=`echo "${@:$(($#-2)):1}"`
+DELTA=`echo "${@:$(($#-1)):1}"`
 # Command-line construction #
 
 #echo "COMM line is $COMM_LINE"
@@ -93,6 +95,8 @@ DIROUT="dirOut"
 cat << DOCKERJOB > .dockerjob.sh
 #!/bin/bash -l
 cd /CreaPhase
+cp /gasw-dir/$MU ./
+cp /gasw-dir/$DELTA ./
 ${BOUTIQUES_COMMAND_LINE}
 DOCKERJOB