X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=cluster_tools%2Fgate_job_ccin2p3.job;h=f07f9c2efec8d8b69ab0df6dd28584fcdc93f496;hb=c6cfe978c3144fea4d6e3432d6f2fbd802956bd0;hp=c7abaacb11eb6d62d3ef05ca1da5e5735ce725a9;hpb=b3d88d60218accc8ba078bc2d7fcc1e5e5befe59;p=clitk.git

diff --git a/cluster_tools/gate_job_ccin2p3.job b/cluster_tools/gate_job_ccin2p3.job
index c7abaac..f07f9c2 100644
--- a/cluster_tools/gate_job_ccin2p3.job
+++ b/cluster_tools/gate_job_ccin2p3.job
@@ -22,6 +22,7 @@ function transferJobData {
     mkdir "${OUTPUTDIR}/output.${JOB_ID%%.*}"
     rsync -av --remove-source-files output/ "${OUTPUTDIR}/output.${JOB_ID%%.*}"
     echo "Cleanup"
+    unlink "${LOCALMACRODIR}"/data
     rm -r ${LOCALMACRODIR}
 }
 
@@ -76,7 +77,9 @@ echo "Copying inputs"
 LOCALMACRODIR=$(mktemp -d)
 trap "wait ; transferJobData ; exit 1" 1 2 3 15
 cd ${LOCALMACRODIR}
-cp -r -L "${MACRODIR}"/{data,mac} .
+cp -r -L "${MACRODIR}"/mac .
+ln -s "${MACRODIR}"/data ./data
+#cp -r -L "${MACRODIR}"/{data,mac} .
 mkdir output
 
 # Enforce one thread