X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=cluster_tools%2Fgate_power_merge.sh;h=cc4203a6e000e5871d929cbd730196e577774760;hb=f3457815210ffe8646f3288be3362d34fcc7c3af;hp=c35d67d6b4238389d1e2ff7af17c483f6077730b;hpb=22e282cf465b7f07cd17c4d615d726b079b84058;p=clitk.git

diff --git a/cluster_tools/gate_power_merge.sh b/cluster_tools/gate_power_merge.sh
index c35d67d..cc4203a 100755
--- a/cluster_tools/gate_power_merge.sh
+++ b/cluster_tools/gate_power_merge.sh
@@ -290,7 +290,7 @@ function merge_mhd_image {
         then
             update_bar ${count} "copying first partial result ${partial}"
             cp "${partial}" "${merged}"
-            if test "$last_character" = "d" 
+            if test "$last_character" = "d"
             then
                 cp "${partial_bin}" "${merged_bin%.*}.${partial_bin##*.}"
             fi
@@ -496,7 +496,7 @@ echo "!!!! this is $0 v0.3k !!!!"
 
 rundir="${1?"provide run dir"}"
 rundir="$(echo "${rundir}" | sed 's|/*$||')"
-nboutputdirs="$(find "${rundir}" -mindepth 1 -type d -o -type l -name 'output*' | wc -l)"
+nboutputdirs="$(find "${rundir}" -mindepth 1 -type d -name 'output*' -o -type l -name 'output*' | wc -l)"
 
 test ${nboutputdirs} -gt 0 || error "no output dir found"
 echo "found ${nboutputdirs} partial output dirs"
@@ -511,7 +511,6 @@ echo "output dir is ${outputdir}"
 
 test -d "${outputdir}" && rm -r "${outputdir}"
 mkdir "${outputdir}"
-ls ${rundir}/
 for outputfile in $(find -L "${rundir}" -regextype 'posix-extended' -type f -regex "${rundir}/output.*\.(hdr|mhd|mha|root|txt)" | awk -F '/' '{ print $NF; }' | sort | uniq)
 do
     merge_dispatcher "${outputfile}"
@@ -530,4 +529,10 @@ then
     cp "${rundir}/params.txt" "${outputdir}/params.txt"
 fi
 
+if [ -d "${rundir}/mac" ]
+then
+    echo "copying mac folder"
+    cp -r "${rundir}/mac" "${outputdir}/mac"
+fi
+
 echo "these was ${warning_count} warning(s)"