X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=common%2FclitkCommon.h;h=769ca63f0bf4400cbb783cf53d3bd7b44b3fc293;hb=2252420857d1554424d1f2c69ea68547bc759678;hp=1c5f9a09bf4d6241046e19481b2b267ae644b1df;hpb=931a42358442f4ee4f314613c991c838d4b4e3b7;p=clitk.git

diff --git a/common/clitkCommon.h b/common/clitkCommon.h
index 1c5f9a0..769ca63 100644
--- a/common/clitkCommon.h
+++ b/common/clitkCommon.h
@@ -1,67 +1,86 @@
+/*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
+
+  Authors belong to: 
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
+
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+
 #ifndef CLITKCOMMON_H
 #define CLITKCOMMON_H
 
-/**
-   -------------------------------------------------------------------
-   * @file   clitkCommon.h
-   * @author David Sarrut <David.Sarrut@creatis.insa-lyon.fr>
-   * @date   17 May 2006 07:57:56
-
-   * @brief  
+// clitk include
+#include "clitkPortability.h"
+#include "clitkDD.h"
+#include "clitkExceptionObject.h"
 
-   -------------------------------------------------------------------*/
+// itk include (include std)
+#include <itkContinuousIndex.h>
+#include <itkMacro.h>
+#include <itkImageRegionConstIterator.h>
+#include <itkImageRegionIterator.h>
 
 // std include
-#include <config.h>
-#include <cstdlib>
-#include <algorithm>
-#include <iostream>
 #include <fstream>
-#include <sstream>
-#include <vector>
-#include <math.h>
-#include <typeinfo>
 
-#include "itkMacro.h"
-#include <itkContinuousIndex.h>
+// Include for "rusage"
+#include <ctime> 
+#if defined(unix) || defined(__APPLE__)
+#  include <sys/time.h>
+#  include <sys/resource.h>
+#elif defined(WIN32)
+#  include <windows.h>
+#endif
 
 //--------------------------------------------------------------------
 namespace clitk {
-  
-#if defined(WIN32)
-#define lrint(x) (floor(x+(x>0) ? 0.5 : -0.5))
-#endif
-  
+
   typedef unsigned char uchar;
   typedef unsigned short ushort;
   typedef unsigned int uint;
+  
+#define CLITK_TRY_CATCH_EXIT(func) \
+  try { \
+    func; \
+  } \
+  catch (const itk::ExceptionObject& e) { \
+    e.Print(std::cout); \
+    exit(-1);\
+  } \
+  catch (const std::exception& e) { \
+    std::cout << e.what() << std::endl; \
+    exit(-2);\
+  } \
+  catch (...) { \
+    std::cout << "Unknown excpetion" << std::endl; \
+    exit(-3); \
+  }
+    
 
   //--------------------------------------------------------------------
-  // display 
-#define DD(a) std::cout << #a " = [ " << a << " ]" << std::endl;
-#define DDV(a,n) { std::cout << #a " = [ "; for(unsigned int _i_=0; _i_<n; _i_++) { std::cout << a[_i_] << " "; }; std::cout << " ]" << std::endl;}
-
+  // when everything goes wrong
+#define WHEREAMI "[ " << __FILE__  << " ] line " << __LINE__
+#define FATAL(a) std::cerr << "ERROR in " << WHEREAMI << ": " << a; exit(0);
+  
   //--------------------------------------------------------------------
   // GGO with modified struct name
-#define GGO(ggo_filename, args_info)                                             \
-  gengetopt_args_info_##ggo_filename args_info;					\
-    cmdline_parser2(argc, argv, &args_info, 1, 1, 0);			\
-    if (args_info.config_given)						\
-      cmdline_parser_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
-    else cmdline_parser(argc, argv, &args_info);
-  
-
-  /*   //--------------------------------------------------------------------
-  // GGO default
 #define GGO(ggo_filename, args_info)                                    \
-  gengetopt_args_info_##ggo_filename args_info;                         \
-  cmdline_parser2(argc, argv, &args_info, 1, 1, 0);			\
+  args_info_##ggo_filename args_info;					\
+  cmdline_parser_##ggo_filename##2(argc, argv, &args_info, 1, 1, 0);			\
   if (args_info.config_given)						\
-    cmdline_parser_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
-  else cmdline_parser(argc, argv, &args_info);
-  
- //--------------------------------------------------------------------
- */
+    cmdline_parser_##ggo_filename##_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
+  else cmdline_parser_##ggo_filename(argc, argv, &args_info);  
+
   //--------------------------------------------------------------------
   // skip line with #
   void skipComment(std::istream & is);
@@ -80,6 +99,9 @@ namespace clitk {
   template<class T> std::string toStringVector(const T * t, const int n);
   template<class T> std::string toStringVector(const T & t, const int n);
   template<class T> std::string toStringVector(const std::vector<T> & t);
+  template <class T> bool fromString(T& t, 
+                                     const std::string& s, 
+                                     std::ios_base& (*f)(std::ios_base&)=std::dec);
 
   //--------------------------------------------------------------------
   // Display a progress %
@@ -187,6 +209,9 @@ namespace clitk {
   void openFileForReading(std::ifstream & is, const std::string & filename);
   void openFileForWriting(std::ofstream & os, const std::string & filename);
 
+  //--------------------------------------------------------------------
+  void readDoubleFromFile(const std::string & filename, std::vector<double> & list);
+
   //--------------------------------------------------------------------
   double cotan(double i);
   double invcotan(double i);
@@ -194,7 +219,21 @@ namespace clitk {
   //--------------------------------------------------------------------
   void disableStdCerr();
   void enableStdCerr();
-  
+
+  //--------------------------------------------------------------------
+  template<class ImageType>
+  void CloneImage(const typename ImageType::Pointer & input, typename ImageType::Pointer & output);
+
+  //--------------------------------------------------------------------
+  void PrintMemoryUsed();
+
+  //--------------------------------------------------------------------
+  // Convert a map to a vector
+  template <typename M, typename V> 
+  void MapToVecFirst(const M & m, V & v);
+  template <typename M, typename V> 
+  void MapToVecSecond(const M & m, V & v);
+
 #include "clitkCommon.txx"
 
 } // end namespace