X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=common%2FclitkDicomRTStruct2ImageFilter.cxx;h=2e11fdc42a6ccd2a3243d8f6598b74c52cddd534;hb=ed673c4df16c5541a1bd46413b4a67376b28008d;hp=bf515a423b460ec958a6dd624bea7587103212c2;hpb=a365564201d98b704f43e1f52124f55f5e110d2e;p=clitk.git

diff --git a/common/clitkDicomRTStruct2ImageFilter.cxx b/common/clitkDicomRTStruct2ImageFilter.cxx
index bf515a4..2e11fdc 100644
--- a/common/clitkDicomRTStruct2ImageFilter.cxx
+++ b/common/clitkDicomRTStruct2ImageFilter.cxx
@@ -31,6 +31,7 @@
 #include <vtkImageStencil.h>
 #include <vtkLinearExtrusionFilter.h>
 #include <vtkMetaImageWriter.h>
+#include <vtkXMLPolyDataWriter.h>
 
 
 //--------------------------------------------------------------------
@@ -38,6 +39,7 @@ clitk::DicomRTStruct2ImageFilter::DicomRTStruct2ImageFilter()
 {
   mROI = NULL;
   mWriteOutput = false;
+  mWriteMesh = false;
   mCropMask = true;
 }
 //--------------------------------------------------------------------
@@ -83,6 +85,14 @@ void clitk::DicomRTStruct2ImageFilter::SetCropMaskEnabled(bool b)
 //--------------------------------------------------------------------
 
 
+//--------------------------------------------------------------------
+void clitk::DicomRTStruct2ImageFilter::SetWriteMesh(bool b)
+{
+  mWriteMesh = b;
+}
+//--------------------------------------------------------------------
+
+
 //--------------------------------------------------------------------
 void clitk::DicomRTStruct2ImageFilter::SetOutputImageFilename(std::string s)
 {
@@ -103,6 +113,7 @@ void clitk::DicomRTStruct2ImageFilter::SetImage(vvImage::Pointer image)
   mOrigin.resize(3);
   mSize.resize(3);
   mDirection.resize(3);
+  mTransformMatrix = image->GetTransform()[0]->GetMatrix();
   for(unsigned int i=0; i<3; i++) {
     mSpacing[i] = image->GetSpacing()[i];
     mOrigin[i] = image->GetOrigin()[i];
@@ -179,7 +190,19 @@ void clitk::DicomRTStruct2ImageFilter::Update()
   }
 
   // Get Mesh
-  vtkPolyData * mesh = mROI->GetMesh();  
+  vtkPolyData * mesh = mROI->GetMesh();
+  if (mWriteMesh) {
+    vtkSmartPointer<vtkXMLPolyDataWriter> meshWriter = vtkSmartPointer<vtkXMLPolyDataWriter>::New();
+    std::string vtkName = mOutputFilename;
+    vtkName += ".vtk";
+    meshWriter->SetFileName(vtkName.c_str());
+#if VTK_MAJOR_VERSION <= 5
+    meshWriter->SetInput(mesh);
+#else
+    meshWriter->SetInputData(mesh);
+#endif
+    meshWriter->Write();
+  }
 
   // Get bounds
   double *bounds=mesh->GetBounds();
@@ -229,7 +252,6 @@ void clitk::DicomRTStruct2ImageFilter::Update()
   extend[0] = ceil((bounds[1]-origin[0])/mSpacing[0]+4);
   extend[1] = ceil((bounds[3]-origin[1])/mSpacing[1]+4);
   extend[2] = ceil((bounds[5]-origin[2])/mSpacing[2]+4);
-
   // If no crop, set initial image size/origin
   if (!mCropMask) {
     for(int i=0; i<3; i++) {