X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=common%2FclitkDicomRT_Contour.cxx;h=4bd4598316a77fb1788851bade1cf883b44d3146;hb=796954f9fff960cee1599e5a8960e0f424931900;hp=a4a69dd600df11350d337434e36937e0316d5895;hpb=3d7149c5d5899df2ab6f0e0753e810b840fb9bf9;p=clitk.git

diff --git a/common/clitkDicomRT_Contour.cxx b/common/clitkDicomRT_Contour.cxx
index a4a69dd..4bd4598 100644
--- a/common/clitkDicomRT_Contour.cxx
+++ b/common/clitkDicomRT_Contour.cxx
@@ -53,6 +53,7 @@ void clitk::DicomRT_Contour::Print(std::ostream & os) const
 
 
 //--------------------------------------------------------------------
+#if GDCM_MAJOR_VERSION == 2
 void clitk::DicomRT_Contour::UpdateDicomItem()
 {
   DD("DicomRT_Contour::UpdateDicomItem");
@@ -81,7 +82,11 @@ void clitk::DicomRT_Contour::UpdateDicomItem()
     double * p = mData->GetPoint(i);
     points[i*3] = p[0];
     points[i*3+1] = p[1];
-    points[i*3+2] = p[2];
+#if VTK_MAJOR_VERSION <= 5
+    points[i*3+1] = p[2];
+#else
+    points[i*3+1] = p[2]-0.5;
+#endif
   }
 
   // Get attribute
@@ -109,6 +114,7 @@ void clitk::DicomRT_Contour::UpdateDicomItem()
   DD(bb[0]);
 
 }
+#endif
 //--------------------------------------------------------------------
 
 
@@ -144,11 +150,7 @@ bool clitk::DicomRT_Contour::Read(gdcm::Item * item)
   const gdcm::DataElement & contourdata = nestedds2.GetDataElement( tcontourdata );
   at.SetFromDataElement( contourdata );
   const double* points = at.GetValues();
-<<<<<<< Updated upstream
-=======
   //  unsigned int npts = at.GetNumberOfValues() / 3;
->>>>>>> Stashed changes
-
   assert(at.GetNumberOfValues() == static_cast<unsigned int>(mNbOfPoints)*3);
 
   // Organize values
@@ -159,7 +161,11 @@ bool clitk::DicomRT_Contour::Read(gdcm::Item * item)
     double p[3];
     p[0] = points[i*3];
     p[1] = points[i*3+1];
+#if VTK_MAJOR_VERSION <= 5
     p[2] = points[i*3+2];
+#else
+    p[2] = points[i*3+2]+0.5;
+#endif
     mData->SetPoint(i, p);
     if (mZ == -1) mZ = p[2];
     if (p[2] != mZ) {
@@ -206,7 +212,11 @@ bool clitk::DicomRT_Contour::Read(gdcm::SQItem * item)
     double p[3];
     p[0] = points[i*3];
     p[1] = points[i*3+1];
+#if VTK_MAJOR_VERSION <= 5
     p[2] = points[i*3+2];
+#else
+    p[2] = points[i*3+2]+0.5;
+#endif
     mData->SetPoint(i, p);
     if (mZ == -1) mZ = p[2];
     if (p[2] != mZ) {
@@ -243,6 +253,14 @@ void clitk::DicomRT_Contour::SetMesh(vtkPolyData * mesh)
 //--------------------------------------------------------------------
 
 
+//--------------------------------------------------------------------
+void clitk::DicomRT_Contour::SetTransformMatrix(vtkMatrix4x4* matrix)
+{
+  mTransformMatrix = matrix;
+}
+//--------------------------------------------------------------------
+
+
 //--------------------------------------------------------------------
 void clitk::DicomRT_Contour::ComputeMeshFromDataPoints()
 {
@@ -253,13 +271,24 @@ void clitk::DicomRT_Contour::ComputeMeshFromDataPoints()
   mMesh->SetPoints(mPoints);
   vtkIdType ids[2];
   for (unsigned int idx=0 ; idx<mNbOfPoints ; idx++) {
+    double pointIn[4], pointOut[4];
+    for (unsigned int j=0 ; j<3; ++j)
+      pointIn[j] = mData->GetPoint(idx)[j];
+    pointIn[4] = 1.0;
+    /*mTransformMatrix->MultiplyPoint(pointIn, pointOut);
+    std::cout << pointOut[0] << " " << pointOut[1] << " " << pointOut[2] << " " << pointOut[3] << std::endl;
+    mMesh->GetPoints()->InsertNextPoint(pointOut[0],
+                                        pointOut[1],
+                                        pointOut[2]);*/
     mMesh->GetPoints()->InsertNextPoint(mData->GetPoint(idx)[0],
                                         mData->GetPoint(idx)[1],
                                         mData->GetPoint(idx)[2]);
+    //std::cout << mData->GetPoint(idx)[0] << " " << mData->GetPoint(idx)[1] << " " << mData->GetPoint(idx)[2] << std::endl;
     ids[0]=idx;
     ids[1]=(ids[0]+1) % mNbOfPoints; //0-1,1-2,...,n-1-0
     mMesh->GetLines()->InsertNextCell(2,ids);
   }
+  //std::cout << std::endl;
   mMeshIsUpToDate = true;
 }
 //--------------------------------------------------------------------