X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=common%2FclitkDicomRT_ROI.cxx;h=d8af8c313e10cbd64a5ae92d649f4001ea9f6ce9;hb=08f7de414957e92b25ca5b299007e941b610d3a8;hp=2e914d6314abd0b035878a37a2da3a9785cdce81;hpb=c1118f288aa299f668cc5f24e44934518b20d905;p=clitk.git

diff --git a/common/clitkDicomRT_ROI.cxx b/common/clitkDicomRT_ROI.cxx
index 2e914d6..d8af8c3 100644
--- a/common/clitkDicomRT_ROI.cxx
+++ b/common/clitkDicomRT_ROI.cxx
@@ -25,7 +25,7 @@
 #include <vtkPolyDataWriter.h>
 #include <vtkVersion.h>
 
-#if GDCM_MAJOR_VERSION == 2
+#if GDCM_MAJOR_VERSION >= 2
 #include "gdcmAttribute.h"
 #include "gdcmItem.h"
 #endif
@@ -148,10 +148,10 @@ double clitk::DicomRT_ROI::GetForegroundValueLabelImage() const
 
 
 //--------------------------------------------------------------------
-#if GDCM_MAJOR_VERSION == 2
+#if GDCM_MAJOR_VERSION >= 2
 bool clitk::DicomRT_ROI::Read(gdcm::Item * itemInfo, gdcm::Item * itemContour)
 {
-  FATAL("Error : compile vv with itk4 + external gdcm");
+  //FATAL("Error : compile vv with itk4 + external gdcm");
   // Keep dicom item
   mItemInfo = itemInfo;
   mItemContour = itemContour;
@@ -211,6 +211,7 @@ bool clitk::DicomRT_ROI::Read(gdcm::Item * itemInfo, gdcm::Item * itemContour)
     {
       gdcm::Item & j = sqi2->GetItem(i+1); // Item start at #1
       DicomRT_Contour::Pointer c = DicomRT_Contour::New();
+      c->SetTransformMatrix(mTransformMatrix);
       bool b = c->Read(&j);
       if (b) {
         mListOfContours.push_back(c);
@@ -237,6 +238,7 @@ void clitk::DicomRT_ROI::Read(std::map<int, std::string> & rois, gdcm::SQItem *
     int i=0;
     for(gdcm::SQItem* j=contours->GetFirstSQItem(); j!=0; j=contours->GetNextSQItem()) {
       DicomRT_Contour::Pointer c = DicomRT_Contour::New();
+      c->SetTransformMatrix(mTransformMatrix);
       bool b = c->Read(j);
       if (b) {
         mListOfContours.push_back(c);
@@ -300,7 +302,7 @@ void clitk::DicomRT_ROI::ComputeMeshFromContour()
 //--------------------------------------------------------------------
 
 
-#if GDCM_MAJOR_VERSION == 2
+#if GDCM_MAJOR_VERSION >= 2
 //--------------------------------------------------------------------
 void clitk::DicomRT_ROI::UpdateDicomItem()
 {
@@ -360,7 +362,6 @@ void clitk::DicomRT_ROI::SetFromBinaryImage(vvImage::Pointer image, int n,
                                             std::vector<double> color, 
                                             std::string filename)
 {
-
   // ROI number [Referenced ROI Number]
   mNumber = n;
 
@@ -388,6 +389,14 @@ vvImage * clitk::DicomRT_ROI::GetImage() const
 //--------------------------------------------------------------------
 
 
+//--------------------------------------------------------------------
+void clitk::DicomRT_ROI::SetTransformMatrix(vtkMatrix4x4* matrix)
+{
+  mTransformMatrix = matrix;
+}
+//--------------------------------------------------------------------
+
+
 //--------------------------------------------------------------------
 void clitk::DicomRT_ROI::ComputeContoursFromImage()
 {
@@ -519,6 +528,7 @@ void clitk::DicomRT_ROI::Read(vtkSmartPointer<vtkGDCMPolyDataReader> & reader, i
   // Get the contour
   mMesh =  reader->GetOutput(roiindex);  
   DicomRT_Contour::Pointer c = DicomRT_Contour::New();
+  c->SetTransformMatrix(mTransformMatrix);
   c->SetMesh(mMesh); // FIXME no GetZ, not GetPoints  
   mMeshIsUpToDate = true;
   mListOfContours.push_back(c);