X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=common%2FclitkDicomRT_ROI_ConvertToImageFilter.cxx;h=e3b34723fdc264865ee925ddac9cd549b836bd67;hb=a48894959f4e7df71c77c91da5e8723b2697a79c;hp=7b4d04e72609f6161a109aec2c32c9f836645bc5;hpb=c93a32f96e61514b8b945d515ffcf11c2a12ae66;p=clitk.git

diff --git a/common/clitkDicomRT_ROI_ConvertToImageFilter.cxx b/common/clitkDicomRT_ROI_ConvertToImageFilter.cxx
index 7b4d04e..e3b3472 100644
--- a/common/clitkDicomRT_ROI_ConvertToImageFilter.cxx
+++ b/common/clitkDicomRT_ROI_ConvertToImageFilter.cxx
@@ -4,7 +4,7 @@
 
   Authors belongs to:
   - University of LYON           http://www.universite-lyon.fr/
-  - Léon Bérard cancer center    http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center    http://www.centreleonberard.fr
   - CREATIS CNRS laboratory      http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -19,12 +19,18 @@
 
 #include <iterator>
 #include <algorithm>
+
+// clitk
 #include "clitkDicomRT_ROI_ConvertToImageFilter.h"
+#include "clitkImageCommon.h"
+
+// vtk
 #include <vtkPolyDataToImageStencil.h>
 #include <vtkSmartPointer.h>
 #include <vtkImageStencil.h>
 #include <vtkLinearExtrusionFilter.h>
-#include "clitkImageCommon.h"
+#include <vtkMetaImageWriter.h>
+
 
 //--------------------------------------------------------------------
 clitk::DicomRT_ROI_ConvertToImageFilter::DicomRT_ROI_ConvertToImageFilter()
@@ -121,11 +127,9 @@ void clitk::DicomRT_ROI_ConvertToImageFilter::Update()
     std::cerr << "Error. Please provide image info (spacing/origin) with SetImageFilename" << std::endl;
     exit(0);
   }
-  // DD("Update");
 
   // Get Mesh
   vtkPolyData * mesh = mROI->GetMesh();
-  DD(mesh->GetNumberOfCells());
 
   // Get bounds
   double *bounds=mesh->GetBounds();
@@ -176,7 +180,8 @@ void clitk::DicomRT_ROI_ConvertToImageFilter::Update()
   // Extrude
   vtkSmartPointer<vtkLinearExtrusionFilter> extrude=vtkSmartPointer<vtkLinearExtrusionFilter>::New();
   extrude->SetInput(mesh);
-  extrude->SetVector(0, 0, mROI->GetContourSpacing());
+  ///We extrude in the -slice_spacing direction to respect the FOCAL convention (NEEDED !)
+  extrude->SetVector(0, 0, -mSpacing[2]);
 
   // Binarization
   vtkSmartPointer<vtkPolyDataToImageStencil> sts=vtkSmartPointer<vtkPolyDataToImageStencil>::New();
@@ -192,6 +197,14 @@ void clitk::DicomRT_ROI_ConvertToImageFilter::Update()
   stencil->SetInput(mBinaryImage);
   stencil->ReverseStencilOn();
   stencil->Update();
+
+  /*
+  vtkSmartPointer<vtkMetaImageWriter> w = vtkSmartPointer<vtkMetaImageWriter>::New();
+  w->SetInput(stencil->GetOutput());
+  w->SetFileName("binary2.mhd");
+  w->Write();
+  */
+
   mBinaryImage->ShallowCopy(stencil->GetOutput());
 
   if (mWriteOutput) {