X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=common%2FclitkImageCommon.h;h=32bba4916c1ec25244a09655bd1a3dcdf6cd54d2;hb=08f7de414957e92b25ca5b299007e941b610d3a8;hp=d3fefb3228b153928429a1bbb2c3e486f1feec7b;hpb=c05b40d385ba67a91c43f9396718f738e191c0e4;p=clitk.git diff --git a/common/clitkImageCommon.h b/common/clitkImageCommon.h index d3fefb3..32bba49 100644 --- a/common/clitkImageCommon.h +++ b/common/clitkImageCommon.h @@ -1,9 +1,9 @@ /*========================================================================= Program: vv http://www.creatis.insa-lyon.fr/rio/vv - Authors belong to: + Authors belong to: - University of LYON http://www.universite-lyon.fr/ - - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr + - Léon Bérard cancer center http://www.centreleonberard.fr - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr This software is distributed WITHOUT ANY WARRANTY; without even @@ -14,103 +14,106 @@ - BSD See included LICENSE.txt file - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html -======================================================================-====*/ +===========================================================================**/ #ifndef CLITKIMAGECOMMON_H #define CLITKIMAGECOMMON_H // clitk -#include "clitkCommon.h" +//#include "clitkCommon.h" // itk #include "itkImage.h" #include "itkImageFileReader.h" #include "itkImageSeriesReader.h" #include "itkImageFileWriter.h" -//#include "gdcmFile.h" -//#include "gdcmFileHelper.h" - - -namespace clitk { - - //-------------------------------------------------------------------- - // New Image creation (no allocation) - template - typename itk::Image::Pointer NewImage1D(int size, double spacing=1.0); - template - typename itk::Image::Pointer NewImage2D(int sx, int sy, double dx=1.0, double dy=1.0); - template - typename itk::Image::Pointer NewImage3D(int sx, int sy, int sz, double dx=1.0, double dy=1.0, double dz=1.0); - template - typename itk::Image::Pointer NewImage4D(int sx, int sy, int sz, int st, double dx=1.0, double dy=1.0, double dz=1.0, double dt=1.0); - - template - typename ImageType::Pointer NewImageLike(const typename ImageType::Pointer input, bool allocate=true); - - template - void CopyValues(const typename ImageType::Pointer input, typename ImageType::Pointer output); - //-------------------------------------------------------------------- - // New Image creation (with allocation) - - //-------------------------------------------------------------------- - // Read an Write image - // template - // typename ImageType::Pointer ReadImage(const std::string & filename, const bool verbose=false); - template - typename ImageType::Pointer readImage(const std::string & filename, const bool verbose=false); - template - typename ImageType::Pointer readImage(const std::vector & filenames, const bool verbose=false); - template - void writeImage(const typename ImageType::Pointer image, const std::string & filename, const bool verbose=false); -// template + +namespace clitk +{ + +//-------------------------------------------------------------------- +// New Image creation (no allocation) +template +typename itk::Image::Pointer NewImage1D(int size, double spacing=1.0); +template +typename itk::Image::Pointer NewImage2D(int sx, int sy, double dx=1.0, double dy=1.0); +template +typename itk::Image::Pointer NewImage3D(int sx, int sy, int sz, double dx=1.0, double dy=1.0, double dz=1.0); +template +typename itk::Image::Pointer NewImage4D(int sx, int sy, int sz, int st, double dx=1.0, double dy=1.0, double dz=1.0, double dt=1.0); + +template +typename ImageType::Pointer NewImageLike(const typename ImageType::Pointer input, bool allocate=true); + +template +void CopyValues(const typename ImageType::Pointer input, typename ImageType::Pointer output); +//-------------------------------------------------------------------- +// New Image creation (with allocation) + +//-------------------------------------------------------------------- +// Read an Write image +// template +// typename ImageType::Pointer ReadImage(const std::string & filename, const bool verbose=false); +template +typename ImageType::Pointer readImage(const std::string & filename, const bool verbose=false); +template +typename ImageType::Pointer readImage(const std::vector & filenames, const bool verbose=false); +template +void writeImage(const typename ImageType::Pointer image, const std::string & filename, const bool verbose=false, const bool compression=false); +// template // void writeConstImage(const typename ImageType::ConstPointer image, const std::string & filename, const bool verbose=false); - template - void writeImage(const ImageType* image, const std::string & filename, const bool verbose=false); - - //-------------------------------------------------------------------- - // Read/print image header - itk::ImageIOBase::Pointer readImageHeader(const std::string & filename,bool exit_on_error=true); - void printImageHeader(itk::ImageIOBase::Pointer header, std::ostream & os, const int level=0); - - //-------------------------------------------------------------------- - // Determine pixetype and dimension of an image file - void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType); - - //-------------------------------------------------------------------- - // Determine pixetype, dimension and number of pixel components of an image file - void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType, int & components); - - //-------------------------------------------------------------------- - // Read a dicom header -// gdcm::File * readDicomHeader(const std::string & filename, const bool verbose=false); - - //-------------------------------------------------------------------- - template - int ComputeHowManyDifferentIntensity(const typename ImageType::Pointer & image, - std::vector & listOfIntensities); - template - void ComputeWeightsOfEachClasses(const typename InputImageType::Pointer & input, - const typename MaskImageType::Pointer & mask, - const std::vector & listOfIntensities, - std::map > & mapOfLabelsAndWeights); - - //-------------------------------------------------------------------- - template - bool HaveSameSizeAndSpacing(typename ImageType1::ConstPointer A, - typename ImageType2::ConstPointer B); - - template - bool HaveSameSizeAndSpacing(typename ImageType1::Pointer A, - typename ImageType2::Pointer B); - - //-------------------------------------------------------------------- - template - bool HaveSameSpacing(typename ImageType1::ConstPointer A, - typename ImageType2::ConstPointer B); - - template - bool HaveSameSpacing(typename ImageType1::Pointer A, - typename ImageType2::Pointer B); +template +void writeImage(const ImageType* image, const std::string & filename, const bool verbose=false, const bool compression=false); + +//-------------------------------------------------------------------- +// Read/print image header +itk::ImageIOBase::Pointer readImageHeader(const std::string & filename,bool exit_on_error=true); +void printImageHeader(itk::ImageIOBase::Pointer header, std::ostream & os, const int level=0); + +//-------------------------------------------------------------------- +// Determine pixetype and dimension of an image file +void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType); + +//-------------------------------------------------------------------- +// Determine pixetype, dimension and number of pixel components of an image file +void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType, int & components); + +//-------------------------------------------------------------------- +template +int ComputeHowManyDifferentIntensity(const typename ImageType::Pointer & image, + std::vector & listOfIntensities); +template +void ComputeWeightsOfEachClasses(const typename InputImageType::Pointer & input, + const typename MaskImageType::Pointer & mask, + const std::vector & listOfIntensities, + std::map > & mapOfLabelsAndWeights); + +//-------------------------------------------------------------------- +template +bool HaveSameSpacing(typename ImageType1::ConstPointer A, + typename ImageType2::ConstPointer B); + +template +bool HaveSameSpacing(typename ImageType1::Pointer A, + typename ImageType2::Pointer B); + +//-------------------------------------------------------------------- +template +bool HaveSameSize(typename ImageType1::ConstPointer A, + typename ImageType2::ConstPointer B); + +template +bool HaveSameSize(typename ImageType1::Pointer A, + typename ImageType2::Pointer B); + +//-------------------------------------------------------------------- +template +bool HaveSameSizeAndSpacing(typename ImageType1::ConstPointer A, + typename ImageType2::ConstPointer B); + +template +bool HaveSameSizeAndSpacing(typename ImageType1::Pointer A, + typename ImageType2::Pointer B); #include "clitkImageCommon.txx"