X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=common%2FclitkImageToImageGenericFilterBase.cxx;h=93b82fdd0f0559f22ddceed72695867d6729cd48;hb=5dc155f99385ef56e5c80dbcc0b7f56760629ade;hp=12781e77c9671dbbb503720ac81bd168dc483e64;hpb=0b7c9b1e1215634b02cbd38d4e4ba101d6111ba8;p=clitk.git diff --git a/common/clitkImageToImageGenericFilterBase.cxx b/common/clitkImageToImageGenericFilterBase.cxx index 12781e7..93b82fd 100644 --- a/common/clitkImageToImageGenericFilterBase.cxx +++ b/common/clitkImageToImageGenericFilterBase.cxx @@ -1,7 +1,7 @@ /*========================================================================= Program: vv http://www.creatis.insa-lyon.fr/rio/vv - Authors belong to: + Authors belong to: - University of LYON http://www.universite-lyon.fr/ - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr @@ -15,7 +15,11 @@ - BSD See included LICENSE.txt file - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html ======================================================================-====*/ + +// clitk #include "clitkImageToImageGenericFilterBase.h" + +// itk #include //-------------------------------------------------------------------- @@ -25,30 +29,37 @@ clitk::ImageToImageGenericFilterBase::~ImageToImageGenericFilterBase() {} //-------------------------------------------------------------------- clitk::ImageToImageGenericFilterBase::ImageToImageGenericFilterBase(std::string n) - :mIOVerbose(false) { - mFilterName = n; - mFailOnImageTypeError = true; - mReadOnDisk = true; + :m_IOVerbose(false) +{ + m_FilterName = n; + m_FailOnImageTypeError = true; + m_ReadOnDisk = true; + m_LastError = ""; + StopOnErrorOn(); + SetFilterBase(NULL); } //-------------------------------------------------------------------- //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::SetInputFilenames(const std::vector & filenames) { - mInputFilenames=filenames; +void clitk::ImageToImageGenericFilterBase::SetInputFilenames(const std::vector & filenames) +{ + m_InputFilenames = filenames; } //-------------------------------------------------------------------- //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::EnableReadOnDisk(bool b) { - mReadOnDisk = b; +void clitk::ImageToImageGenericFilterBase::EnableReadOnDisk(bool b) +{ + m_ReadOnDisk = b; } //-------------------------------------------------------------------- //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::SetInputFilename(const std::string & filename) { +void clitk::ImageToImageGenericFilterBase::SetInputFilename(const std::string & filename) +{ std::vector f; f.push_back(filename); SetInputFilenames(f); @@ -57,16 +68,18 @@ void clitk::ImageToImageGenericFilterBase::SetInputFilename(const std::string & //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::AddInputFilename(const std::string & filename) { - mInputFilenames.push_back(filename); +void clitk::ImageToImageGenericFilterBase::AddInputFilename(const std::string & filename) +{ + m_InputFilenames.push_back(filename); } //-------------------------------------------------------------------- //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::SetOutputFilename(const std::string & filename) { - mOutputFilenames.clear(); - mOutputFilenames.push_back(filename); +void clitk::ImageToImageGenericFilterBase::SetOutputFilename(const std::string & filename) +{ + m_OutputFilenames.clear(); + m_OutputFilenames.push_back(filename); } //-------------------------------------------------------------------- @@ -74,7 +87,7 @@ void clitk::ImageToImageGenericFilterBase::SetOutputFilename(const std::string & //-------------------------------------------------------------------- void clitk::ImageToImageGenericFilterBase::AddOutputFilename(const std::string & filename) { - mOutputFilenames.push_back(filename); + m_OutputFilenames.push_back(filename); } //-------------------------------------------------------------------- @@ -82,8 +95,8 @@ void clitk::ImageToImageGenericFilterBase::AddOutputFilename(const std::string & //-------------------------------------------------------------------- void clitk::ImageToImageGenericFilterBase::SetOutputFilenames(const std::vector & filenames) { - mOutputFilenames.clear(); - std::copy(filenames.begin(),filenames.end(),mOutputFilenames.begin()); + m_OutputFilenames.clear(); + std::copy(filenames.begin(),filenames.end(),m_OutputFilenames.begin()); } //-------------------------------------------------------------------- @@ -91,32 +104,31 @@ void clitk::ImageToImageGenericFilterBase::SetOutputFilenames(const std::vector< //-------------------------------------------------------------------- std::string clitk::ImageToImageGenericFilterBase::GetOutputFilename() { - assert(mOutputFilenames.size() == 1); - return mOutputFilenames.front(); + assert(m_OutputFilenames.size() == 1); + return m_OutputFilenames.front(); } //-------------------------------------------------------------------- //-------------------------------------------------------------------- void clitk::ImageToImageGenericFilterBase::GetInputImageDimensionAndPixelType(unsigned int& dim, \ - std::string& pixeltype,unsigned int& components) + std::string& pixeltype,unsigned int& components) { - if (mReadOnDisk && mInputFilenames.size()) { + if (m_ReadOnDisk && m_InputFilenames.size()) { int comp_temp,dim_temp; //clitkCommonImage takes ints - ReadImageDimensionAndPixelType(mInputFilenames[0], dim_temp, pixeltype,comp_temp); - components=comp_temp; dim=dim_temp; - } - else { - if (mInputVVImages.size()) { - pixeltype=mInputVVImages[0]->GetScalarTypeAsString(); - dim=mInputVVImages[0]->GetNumberOfDimensions(); - components=mInputVVImages[0]->GetNumberOfScalarComponents(); - } - else - assert(false); //No input image, shouldn't happen + ReadImageDimensionAndPixelType(m_InputFilenames[0], dim_temp, pixeltype,comp_temp); + components=comp_temp; + dim=dim_temp; + } else { + if (m_InputVVImages.size()) { + pixeltype = m_InputVVImages[0]->GetScalarTypeAsITKString(); + dim = m_InputVVImages[0]->GetNumberOfDimensions(); + components = m_InputVVImages[0]->GetNumberOfScalarComponents(); + } else + assert(false); //No input image, shouldn't happen } - if (mIOVerbose) { - std::cout << "Input is " << mDim << "D " << mPixelTypeName << "." << std::endl; + if (m_IOVerbose) { + std::cout << "Input is " << m_Dim << "D " << m_PixelTypeName << "." << std::endl; } } //-------------------------------------------------------------------- @@ -125,8 +137,8 @@ void clitk::ImageToImageGenericFilterBase::GetInputImageDimensionAndPixelType(un //-------------------------------------------------------------------- vvImage::Pointer clitk::ImageToImageGenericFilterBase::GetOutputVVImage () { - assert(mOutputVVImages.size()); - return mOutputVVImages[0]; + assert(m_OutputVVImages.size()); + return m_OutputVVImages[0]; } //-------------------------------------------------------------------- @@ -134,7 +146,7 @@ vvImage::Pointer clitk::ImageToImageGenericFilterBase::GetOutputVVImage () //-------------------------------------------------------------------- std::vector clitk::ImageToImageGenericFilterBase::GetOutputVVImages() { - return mOutputVVImages; + return m_OutputVVImages; } //-------------------------------------------------------------------- @@ -142,8 +154,8 @@ std::vector clitk::ImageToImageGenericFilterBase::GetOutputVVI //-------------------------------------------------------------------- void clitk::ImageToImageGenericFilterBase::SetInputVVImage (vvImage::Pointer input) { - mInputVVImages.clear(); - mInputVVImages.push_back(input); + m_InputVVImages.clear(); + m_InputVVImages.push_back(input); } //-------------------------------------------------------------------- @@ -151,7 +163,7 @@ void clitk::ImageToImageGenericFilterBase::SetInputVVImage (vvImage::Pointer inp //-------------------------------------------------------------------- void clitk::ImageToImageGenericFilterBase::AddInputVVImage (vvImage::Pointer input) { - mInputVVImages.push_back(input); + m_InputVVImages.push_back(input); } //-------------------------------------------------------------------- @@ -159,13 +171,14 @@ void clitk::ImageToImageGenericFilterBase::AddInputVVImage (vvImage::Pointer inp //-------------------------------------------------------------------- void clitk::ImageToImageGenericFilterBase::SetInputVVImages (std::vector input) { - mInputVVImages=input; + m_InputVVImages=input; } //-------------------------------------------------------------------- //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::PrintAvailableImageTypes() { +void clitk::ImageToImageGenericFilterBase::PrintAvailableImageTypes() +{ std::cout << GetAvailableImageTypes(); } //-------------------------------------------------------------------- @@ -173,11 +186,12 @@ void clitk::ImageToImageGenericFilterBase::PrintAvailableImageTypes() { //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::ImageTypeError() { - std::cerr << "**Error** The filter <" << mFilterName << "> is not available for " - << mDim << "D images with pixel=" - << mPixelTypeName << " and " - << mNbOfComponents << " component." << std::endl; +void clitk::ImageToImageGenericFilterBase::ImageTypeError() +{ + std::cerr << "**Error** The filter <" << m_FilterName << "> is not available for " + << m_Dim << "D images with pixel=" + << m_PixelTypeName << " and " + << m_NbOfComponents << " component." << std::endl; std::cerr << GetAvailableImageTypes(); exit(0); } @@ -185,7 +199,8 @@ void clitk::ImageToImageGenericFilterBase::ImageTypeError() { //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::SetImageTypeError() { +void clitk::ImageToImageGenericFilterBase::SetImageTypeError() +{ std::cerr << "TODO ! " << std::endl; exit(0); } @@ -193,22 +208,25 @@ void clitk::ImageToImageGenericFilterBase::SetImageTypeError() { //-------------------------------------------------------------------- -const std::string & clitk::ImageToImageGenericFilterBase::GetFilterName() { - return mFilterName; +const std::string & clitk::ImageToImageGenericFilterBase::GetFilterName() +{ + return m_FilterName; } //-------------------------------------------------------------------- //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::SetFilterName(std::string & n) { - mFilterName = n; +void clitk::ImageToImageGenericFilterBase::SetFilterName(std::string & n) +{ + m_FilterName = n; } //-------------------------------------------------------------------- //-------------------------------------------------------------------- -void clitk::ImageToImageGenericFilterBase::SetIOVerbose(bool b) { - mIOVerbose = b; +void clitk::ImageToImageGenericFilterBase::SetIOVerbose(bool b) +{ + m_IOVerbose = b; } //-------------------------------------------------------------------- @@ -260,33 +278,42 @@ DEF_SetNextOutput_And_GetInput(double, 4); //-------------------------------------------------------------------- -template -void clitk::ImageToImageGenericFilterBase::SetNextOutput(typename ImageType::Pointer output) { - if (mOutputFilenames.size()) - { - clitk::writeImage(output, mOutputFilenames.front(), mIOVerbose); - mOutputFilenames.pop_front(); - } - if (mInputVVImages.size()) //We assume that if a vv image is set as input, we want one as the output - mOutputVVImages.push_back(vvImageFromITK(output)); +template +void clitk::ImageToImageGenericFilterBase::SetNextOutput(typename ImageType::Pointer output) +{ + if (m_OutputFilenames.size()) { + clitk::writeImage(output, m_OutputFilenames.front(), m_IOVerbose); + m_OutputFilenames.pop_front(); + } + if (m_InputVVImages.size()) //We assume that if a vv image is set as input, we want one as the output + m_OutputVVImages.push_back(vvImageFromITK(output)); } //-------------------------------------------------------------------- //-------------------------------------------------------------------- -template -typename ImageType::Pointer clitk::ImageToImageGenericFilterBase::GetInput(unsigned int n) { - if (mReadOnDisk && mInputFilenames.size() > n) { - return clitk::readImage(mInputFilenames[n], mIOVerbose); +template +typename ImageType::Pointer clitk::ImageToImageGenericFilterBase::GetInput(unsigned int n) +{ + if (m_ReadOnDisk && m_InputFilenames.size() > n) { + return clitk::readImage(m_InputFilenames[n], m_IOVerbose); + } else { + if (m_InputVVImages.size() > n) + return typename ImageType::Pointer(const_cast(vvImageToITK(m_InputVVImages[n]).GetPointer())); + else { + assert(false); //No input, this shouldn't happen + return typename ImageType::Pointer(NULL); + } } - else { - if (mInputVVImages.size() > n) - return typename ImageType::Pointer(const_cast(vvImageToITK(mInputVVImages[n]).GetPointer())); - else - { - assert(false); //No input, this shouldn't happen - return typename ImageType::Pointer(NULL); - } +} +//-------------------------------------------------------------------- + + +//-------------------------------------------------------------------- +void clitk::ImageToImageGenericFilterBase::MustStop() +{ + if (m_FilterBase != NULL) { + m_FilterBase->SetMustStop(true); } } //--------------------------------------------------------------------