X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=common%2FvvImage.cxx;h=4675cf5b661453428bd561d81bbc623c75be092c;hb=dd629343e9209aa7a536b205f390f59f00247049;hp=ae5c5a645ca5c842524be2c8b03c617485254571;hpb=9bcf64b7f7c5a7f0a39843df634c05b5d9e4e237;p=clitk.git

diff --git a/common/vvImage.cxx b/common/vvImage.cxx
index ae5c5a6..4675cf5 100644
--- a/common/vvImage.cxx
+++ b/common/vvImage.cxx
@@ -1,215 +1,248 @@
-#ifndef VVIMAGE_CXX
-#define VVIMAGE_CXX
-
-/*-------------------------------------------------------------------------
-
-Program:   vv
-Language:  C++
-Author :   Pierre Seroul (pierre.seroul@gmail.com)
-
-Copyright (C) 2008
-Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
-CREATIS-LRMN http://www.creatis.insa-lyon.fr
+/*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
 
-This program is free software: you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation, version 3 of the License.
+  Authors belong to:
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
 
-You should have received a copy of the GNU General Public License
-along with this program.  If not, see <http://www.gnu.org/licenses/>.
-
--------------------------------------------------------------------------*/
+  It is distributed under dual licence
 
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
+#ifndef VVIMAGE_CXX
+#define VVIMAGE_CXX
 #include "vvImage.h"
-#include "vtkImageData.h"
 #include "clitkCommon.h"
+#include <vtkImageData.h>
+#include <vtkImageReslice.h>
 #include <cassert>
 
+#include <vtkGeneralTransform.h>
+#include <vtkTransform.h>
+#include <vtkGridTransform.h>
+
 //--------------------------------------------------------------------
-vvImage::vvImage() {
-    mVtkImages.resize(0);
+vvImage::vvImage():mGeneralTransform(vtkSmartPointer<vtkGeneralTransform>::New()),
+		   mTransform       (vtkSmartPointer<vtkTransform>::New()),
+	           mGridTransform   (vtkSmartPointer<vtkGridTransform>::New())
+{
+  mGeneralTransform->Concatenate(mTransform);
+  mGeneralTransform->Concatenate(mGridTransform);
+  Init();
 }
 //--------------------------------------------------------------------
 
+
 //--------------------------------------------------------------------
-vvImage::~vvImage() {
-    for (unsigned int i = 0; i < mVtkImages.size(); i++) {
-        if (mVtkImages[i] != NULL)
-            mVtkImages[i]->Delete();
-    }
+void vvImage::Init()
+{
+  mTimeSpacing = 1;
+  mTimeOrigin = 0;
 }
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-void vvImage::SetImage(std::vector<vtkImageData*> images) {
-    for (unsigned int i = 0; i < mVtkImages.size(); i++) {
-        if (mVtkImages[i] != NULL)
-            mVtkImages[i]->Delete();
-    }
-    mVtkImages.resize(0);
-    for (unsigned int i = 0; i < images.size(); i++) {
-        mVtkImages.push_back(images[i]);
-    }
+vvImage::~vvImage()
+{
+  DD("vvImage got deleted!");
+  Reset();
 }
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-void vvImage::AddImage(vtkImageData* image) {
-    mVtkImages.push_back(image);
+void vvImage::Reset()
+{
+  for (unsigned int i = 0; i < mVtkImages.size(); i++)
+    mVtkImageReslice[i]->GetInput()->Delete();
+
+  mVtkImages.resize(0);
+  mVtkImageReslice.resize(0);
+
+  Init();
 }
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-void vvImage::Init() {
-    for (unsigned int i = 0; i < mVtkImages.size(); i++) {
-        if (mVtkImages[i] != NULL)
-            mVtkImages[i]->Delete();
-    }
-    mVtkImages.resize(0);
+void vvImage::SetImage(std::vector< vtkImageData* > images)
+{
+  Reset();
+  for (unsigned int i = 0; i < images.size(); i++)
+    AddImage(images[i]);
 }
 //--------------------------------------------------------------------
 
+
 //--------------------------------------------------------------------
-int vvImage::GetNumberOfSpatialDimensions() {
-    int dim=GetNumberOfDimensions();
-    if (IsTimeSequence())
-        return dim-1;
-    else
-        return dim;
+void vvImage::AddImage(vtkImageData* image)
+{
+  mVtkImageReslice.push_back(vtkSmartPointer<vtkImageReslice>::New());
+
+  mVtkImageReslice.back()->SetInterpolationModeToLinear();
+  mVtkImageReslice.back()->AutoCropOutputOn();
+  mVtkImageReslice.back()->SetBackgroundColor(-1000,-1000,-1000,1);
+  mVtkImageReslice.back()->SetResliceTransform(mGeneralTransform);
+  mVtkImageReslice.back()->SetInput(0, image);
+  mVtkImageReslice.back()->Update();
+
+  mVtkImages.push_back( mVtkImageReslice.back()->GetOutput(0) );
 }
 //--------------------------------------------------------------------
-//
+
 //--------------------------------------------------------------------
-int vvImage::GetNumberOfDimensions() const {
-    if (mVtkImages.size())
-    {
-        int dimension = 2;
-        int extent[6];
-        mVtkImages[0]->GetWholeExtent(extent);
-        if (extent[5] - extent[4] >= 1)
-            dimension++;
-        if (mVtkImages.size() > 1)
-            dimension++;
-        return dimension;
-    }
-    return 0;
+int vvImage::GetNumberOfSpatialDimensions()
+{
+  int dim=GetNumberOfDimensions();
+  if (IsTimeSequence())
+    return dim-1;
+  else
+    return dim;
 }
 //--------------------------------------------------------------------
-void vvImage::GetScalarRange(double* range)
+
+//--------------------------------------------------------------------
+int vvImage::GetNumberOfDimensions() const
 {
-    assert(mVtkImages.size());
-    double * temp = mVtkImages[0]->GetScalarRange();
-    range[0]=temp[0];range[1]=temp[1];
-    for (unsigned int i=1;i<mVtkImages.size();i++)
-    {
-        temp = mVtkImages[i]->GetScalarRange();
-        if (temp[0] < range[0]) range[0]=temp[0];
-        if (temp[1] > range[1]) range[1]=temp[1];
-    }
+  if (mVtkImages.size()) {
+    int dimension = 2;
+    int extent[6];
+    mVtkImages[0]->GetWholeExtent(extent);
+    if (extent[5] - extent[4] >= 1)
+      dimension++;
+    if (mVtkImages.size() > 1)
+      dimension++;
+    return dimension;
+  }
+  return 0;
 }
+//--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-std::string vvImage::GetScalarTypeAsString() {
-    return mVtkImages[0]->GetScalarTypeAsString();
+void vvImage::GetScalarRange(double* range)
+{
+  assert(mVtkImages.size());
+  double * temp = mVtkImages[0]->GetScalarRange();
+  range[0]=temp[0];
+  range[1]=temp[1];
+  for (unsigned int i=1; i<mVtkImages.size(); i++) {
+    temp = mVtkImages[i]->GetScalarRange();
+    if (temp[0] < range[0]) range[0]=temp[0];
+    if (temp[1] > range[1]) range[1]=temp[1];
+  }
 }
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-int vvImage::GetNumberOfScalarComponents() {
-    return mVtkImages[0]->GetNumberOfScalarComponents();
+std::string vvImage::GetScalarTypeAsITKString()
+{
+  // WARNING VTK pixel type different from ITK Pixel type
+  std::string vtktype = mVtkImages[0]->GetScalarTypeAsString();
+  if (vtktype == "unsigned char") return "unsigned_char";
+  if (vtktype == "unsigned short") return "unsigned_short";
+  if (vtktype == "unsigned int") return "unsigned_int";
+  return vtktype;
 }
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-int vvImage::GetScalarSize() {
-    return mVtkImages[0]->GetScalarSize();
+int vvImage::GetNumberOfScalarComponents()
+{
+  return mVtkImages[0]->GetNumberOfScalarComponents();
 }
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-std::vector<double> vvImage::GetSpacing() {
-    std::vector<double> spacing;
-    int dim = this->GetNumberOfDimensions();
-    for (int i = 0; i < dim; i++)
-    {
-        if (i == 3)
-            spacing.push_back(1);
-        else
-            spacing.push_back(mVtkImages[0]->GetSpacing()[i]);
-    }
-    return spacing;
+int vvImage::GetScalarSize()
+{
+  return mVtkImages[0]->GetScalarSize();
 }
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-std::vector<double> vvImage::GetOrigin() const {
-    std::vector<double> origin;
-    int dim = this->GetNumberOfDimensions();
-    for (int i = 0; i < dim; i++)
-    {
-        if (i == 3)
-            origin.push_back(0);
-        else
-            origin.push_back(mVtkImages[0]->GetOrigin()[i]);
-    }
-    return origin;
+std::vector<double> vvImage::GetSpacing()
+{
+  std::vector<double> spacing;
+  int dim = this->GetNumberOfDimensions();
+  for (int i = 0; i < dim; i++) {
+    if (i == 3)
+      spacing.push_back(mTimeSpacing);
+    else
+      spacing.push_back(mVtkImages[0]->GetSpacing()[i]);
+  }
+  return spacing;
+}
+//--------------------------------------------------------------------
+std::vector<double> vvImage::GetOrigin() const
+{
+  std::vector<double> origin;
+  int dim = this->GetNumberOfDimensions();
+  for (int i = 0; i < dim; i++) {
+    if (i == 3)
+      origin.push_back(mTimeOrigin);
+    else
+      origin.push_back(mVtkImages[0]->GetOrigin()[i]);
+  }
+  return origin;
 }
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-std::vector<int> vvImage::GetSize() {
-    std::vector<int> size0;
-    int dim = this->GetNumberOfDimensions();
-    for (int i = 0; i < dim; i++)
-    {
-        if (i == 3)
-            size0.push_back(mVtkImages.size());
-        else
-            size0.push_back(mVtkImages[0]->GetDimensions()[i]);
-    }
-    return size0;
+std::vector<int> vvImage::GetSize()
+{
+  std::vector<int> size0;
+  int dim = this->GetNumberOfDimensions();
+  for (int i = 0; i < dim; i++) {
+    if (i == 3)
+      size0.push_back(mVtkImages.size());
+    else
+      size0.push_back(mVtkImages[0]->GetDimensions()[i]);
+  }
+  return size0;
 }
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-unsigned long vvImage::GetActualMemorySize() {
-    unsigned long size = 0;
-    for (unsigned int i = 0; i < mVtkImages.size(); i++) {
-        size += mVtkImages[i]->GetActualMemorySize();
-    }
-    return size;
+unsigned long vvImage::GetActualMemorySize()
+{
+  unsigned long size = 0;
+  for (unsigned int i = 0; i < mVtkImages.size(); i++) {
+    size += mVtkImages[i]->GetActualMemorySize();
+  }
+  return size;
 }
 //--------------------------------------------------------------------
 
 
 //--------------------------------------------------------------------
-bool vvImage::IsTimeSequence() {
+bool vvImage::IsTimeSequence()
+{
   return mVtkImages.size()>1;
 }
 //--------------------------------------------------------------------
 
 
 //--------------------------------------------------------------------
-const std::vector<vtkImageData*>& vvImage::GetVTKImages() {
+const std::vector<vtkImageData*>& vvImage::GetVTKImages()
+{
   return mVtkImages;
 }
 //--------------------------------------------------------------------
 
-
 //--------------------------------------------------------------------
-vtkImageData* vvImage::GetFirstVTKImageData() { 
-  return mVtkImages[0]; 
+vtkImageData* vvImage::GetFirstVTKImageData()
+{
+  return mVtkImages[0];
 }
 //--------------------------------------------------------------------
 
-
 //--------------------------------------------------------------------
-bool vvImage::IsScalarTypeInteger() {
+bool vvImage::IsScalarTypeInteger()
+{
   assert(mVtkImages.size()> 0);
   int t = mVtkImages[0]->GetScalarType();
   return IsScalarTypeInteger(t);
@@ -217,7 +250,8 @@ bool vvImage::IsScalarTypeInteger() {
 //--------------------------------------------------------------------
 
 //--------------------------------------------------------------------
-bool vvImage::IsScalarTypeInteger(int t) {
+bool vvImage::IsScalarTypeInteger(int t)
+{
   if ((t == VTK_BIT) ||
       (t == VTK_CHAR) ||
       (t == VTK_UNSIGNED_CHAR) ||
@@ -228,11 +262,47 @@ bool vvImage::IsScalarTypeInteger(int t) {
       (t == VTK_LONG) ||
       (t == VTK_UNSIGNED_LONG))    {
     return true;
-  }
-  else {
+  } else {
     return false;
   }
 }
+
+//--------------------------------------------------------------------
+
+//--------------------------------------------------------------------
+vtkSmartPointer<vtkTransform> vvImage::GetTransform()
+{
+  return mTransform;
+}
+//--------------------------------------------------------------------
+
+//--------------------------------------------------------------------
+vtkSmartPointer<vtkGridTransform> vvImage::GetGridTransform()
+{
+  return mGridTransform;
+}
+//--------------------------------------------------------------------
+
+//--------------------------------------------------------------------
+void vvImage::UpdateReslice()
+{
+  for (unsigned int i=0; i<mVtkImageReslice.size(); i++) {
+    mVtkImageReslice[i]->Update();
+  }
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+vtkImageData * CopyAndCastToFloatFrom(vtkImageData * input)
+{
+  vtkImageData * p = vtkImageData::New();
+  p->SetExtent(input->GetExtent ()); // Only first ! could not be 4D
+  p->SetScalarTypeToFloat();
+  p->AllocateScalars();
+  p->CopyAndCastFrom(input, input->GetExtent());
+  return p;
+}
 //--------------------------------------------------------------------