X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=filters%2FclitkImageArithmGenericFilter.txx;fp=filters%2FclitkImageArithmGenericFilter.txx;h=99f7f32bc9d1af553f34883b9a6ce1ec64af277b;hb=1e034c70105f0926939acaaa27ddb46e904ae8bf;hp=9679d028e4ffa1cd5dd4f846954b79a2c999371d;hpb=959d91564af1b0e33303f3c15d803d2dafcaa54d;p=clitk.git diff --git a/filters/clitkImageArithmGenericFilter.txx b/filters/clitkImageArithmGenericFilter.txx index 9679d02..99f7f32 100644 --- a/filters/clitkImageArithmGenericFilter.txx +++ b/filters/clitkImageArithmGenericFilter.txx @@ -1,7 +1,7 @@ /*========================================================================= Program: vv http://www.creatis.insa-lyon.fr/rio/vv - Authors belong to: + Authors belong to: - University of LYON http://www.universite-lyon.fr/ - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr @@ -19,313 +19,347 @@ #define CLITKIMAGEARITHMGENERICFILTER_TXX namespace clitk { - - //-------------------------------------------------------------------- - template - ImageArithmGenericFilter::ImageArithmGenericFilter() - :ImageToImageGenericFilter("ImageArithmGenericFilter"),mTypeOfOperation(0) { - InitializeImageType<2>(); - InitializeImageType<3>(); - InitializeImageType<4>(); - mIsOperationUseASecondImage = false; - mOverwriteInputImage = true; - } - //-------------------------------------------------------------------- +//-------------------------------------------------------------------- +template +ImageArithmGenericFilter::ImageArithmGenericFilter() + :ImageToImageGenericFilter("ImageArithmGenericFilter"),mTypeOfOperation(0) +{ + InitializeImageType<2>(); + InitializeImageType<3>(); + InitializeImageType<4>(); + mIsOperationUseASecondImage = false; + mOverwriteInputImage = true; +} +//-------------------------------------------------------------------- - //-------------------------------------------------------------------- - template - template - void ImageArithmGenericFilter::InitializeImageType() { - ADD_DEFAULT_IMAGE_TYPES(Dim); - } - //-------------------------------------------------------------------- +//-------------------------------------------------------------------- +template +template +void ImageArithmGenericFilter::InitializeImageType() +{ + ADD_DEFAULT_IMAGE_TYPES(Dim); +} +//-------------------------------------------------------------------- - //-------------------------------------------------------------------- - template - void ImageArithmGenericFilter::EnableOverwriteInputImage(bool b) { - mOverwriteInputImage = b; - } - //-------------------------------------------------------------------- + +//-------------------------------------------------------------------- +template +void ImageArithmGenericFilter::EnableOverwriteInputImage(bool b) +{ + mOverwriteInputImage = b; +} +//-------------------------------------------------------------------- - //-------------------------------------------------------------------- - template - void ImageArithmGenericFilter::SetArgsInfo(const args_info_type & a) { - mArgsInfo=a; +//-------------------------------------------------------------------- +template +void ImageArithmGenericFilter::SetArgsInfo(const args_info_type & a) +{ + mArgsInfo=a; - // Set value - SetIOVerbose(mArgsInfo.verbose_flag); - mTypeOfOperation = mArgsInfo.operation_arg; - mDefaultPixelValue = mArgsInfo.pixelValue_arg; - mScalar = mArgsInfo.scalar_arg; - mOutputIsFloat = mArgsInfo.setFloatOutput_flag; + // Set value + SetIOVerbose(mArgsInfo.verbose_flag); + mTypeOfOperation = mArgsInfo.operation_arg; + mDefaultPixelValue = mArgsInfo.pixelValue_arg; + mScalar = mArgsInfo.scalar_arg; + mOutputIsFloat = mArgsInfo.setFloatOutput_flag; - if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes(); + if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes(); - if (mArgsInfo.input1_given) AddInputFilename(mArgsInfo.input1_arg); - if (mArgsInfo.input2_given) { - mIsOperationUseASecondImage = true; - AddInputFilename(mArgsInfo.input2_arg); - } - - if (mArgsInfo.output_given) SetOutputFilename(mArgsInfo.output_arg); + if (mArgsInfo.input1_given) AddInputFilename(mArgsInfo.input1_arg); + if (mArgsInfo.input2_given) { + mIsOperationUseASecondImage = true; + AddInputFilename(mArgsInfo.input2_arg); + } + + if (mArgsInfo.output_given) SetOutputFilename(mArgsInfo.output_arg); - // Check type of operation (with scalar or with other image) - if ((mArgsInfo.input2_given) && (mArgsInfo.scalar_given)) { - std::cerr << "ERROR : you cannot provide both --scalar and --input2 option" << std::endl; + // Check type of operation (with scalar or with other image) + if ((mArgsInfo.input2_given) && (mArgsInfo.scalar_given)) { + std::cerr << "ERROR : you cannot provide both --scalar and --input2 option" << std::endl; + exit(-1); + } + if ((!mArgsInfo.input2_given) && (!mArgsInfo.scalar_given)) { + if (mArgsInfo.operation_arg < 5) { + std::cerr << "Such operation need the --scalar option." << std::endl; exit(-1); } - if ((!mArgsInfo.input2_given) && (!mArgsInfo.scalar_given)) { - if (mArgsInfo.operation_arg < 5) { - std::cerr << "Such operation need the --scalar option." << std::endl; - exit(-1); - } - } } - //-------------------------------------------------------------------- +} +//-------------------------------------------------------------------- - //-------------------------------------------------------------------- - template - template - void ImageArithmGenericFilter::UpdateWithInputImageType() { - // Read input1 - typename ImageType::Pointer input1 = this->template GetInput(0); +//-------------------------------------------------------------------- +template +template +void ImageArithmGenericFilter::UpdateWithInputImageType() +{ + // Read input1 + typename ImageType::Pointer input1 = this->template GetInput(0); - // Set input image iterator - typedef itk::ImageRegionIterator IteratorType; - IteratorType it(input1, input1->GetLargestPossibleRegion()); + // Set input image iterator + typedef itk::ImageRegionIterator IteratorType; + IteratorType it(input1, input1->GetLargestPossibleRegion()); - // typedef input2 - typename ImageType::Pointer input2 = this->template GetInput(1); - IteratorType it2; + // typedef input2 + typename ImageType::Pointer input2 = this->template GetInput(1); + IteratorType it2; - if (mIsOperationUseASecondImage) { - // Read input2 - input2 = this->template GetInput(1); - // Set input image iterator - it2 = IteratorType(input2, input2->GetLargestPossibleRegion()); - } + if (mIsOperationUseASecondImage) { + // Read input2 + input2 = this->template GetInput(1); + // Set input image iterator + it2 = IteratorType(input2, input2->GetLargestPossibleRegion()); + } - // Check if overwrite and outputisfloat and pixeltype is not float -> do not overwrite - if (mOverwriteInputImage && mOutputIsFloat && (typeid(typename ImageType::PixelType) != typeid(float))) { - // std::cerr << "Warning. Could not use both mOverwriteInputImage and mOutputIsFloat, because input is " - // << typeid(PixelType).name() - // << std::endl; - mOverwriteInputImage = false; - } + // Check if overwrite and outputisfloat and pixeltype is not float -> do not overwrite + if (mOverwriteInputImage && mOutputIsFloat && (typeid(typename ImageType::PixelType) != typeid(float))) { + // std::cerr << "Warning. Could not use both mOverwriteInputImage and mOutputIsFloat, because input is " + // << typeid(PixelType).name() + // << std::endl; + mOverwriteInputImage = false; + } + + // ---------------- Overwrite input Image --------------------- + if (mOverwriteInputImage) { + // Set output iterator (to input1) + IteratorType ito = IteratorType(input1, input1->GetLargestPossibleRegion()); + if (mIsOperationUseASecondImage) ComputeImage(it, it2, ito); + else ComputeImage(it, ito); + this->template SetNextOutput(input1); + } - // ---------------- Overwrite input Image --------------------- - if (mOverwriteInputImage) { - // Set output iterator (to input1) - IteratorType ito = IteratorType(input1, input1->GetLargestPossibleRegion()); + // ---------------- Create new output Image --------------------- + else { + if (mOutputIsFloat) { + // Create output image + typedef itk::Image OutputImageType; + typename OutputImageType::Pointer output = OutputImageType::New(); + output->SetRegions(input1->GetLargestPossibleRegion()); + output->SetOrigin(input1->GetOrigin()); + output->SetSpacing(input1->GetSpacing()); + output->Allocate(); + // Set output iterator + typedef itk::ImageRegionIterator IteratorOutputType; + IteratorOutputType ito = IteratorOutputType(output, output->GetLargestPossibleRegion()); if (mIsOperationUseASecondImage) ComputeImage(it, it2, ito); else ComputeImage(it, ito); - this->template SetNextOutput(input1); - } - - // ---------------- Create new output Image --------------------- - else { - if (mOutputIsFloat) { - // Create output image - typedef itk::Image OutputImageType; - typename OutputImageType::Pointer output = OutputImageType::New(); - output->SetRegions(input1->GetLargestPossibleRegion()); - output->SetOrigin(input1->GetOrigin()); - output->SetSpacing(input1->GetSpacing()); - output->Allocate(); - // Set output iterator - typedef itk::ImageRegionIterator IteratorOutputType; - IteratorOutputType ito = IteratorOutputType(output, output->GetLargestPossibleRegion()); - if (mIsOperationUseASecondImage) ComputeImage(it, it2, ito); - else ComputeImage(it, ito); - this->template SetNextOutput(output); - } - else { - // Create output image - typedef ImageType OutputImageType; - typename OutputImageType::Pointer output = OutputImageType::New(); - output->SetRegions(input1->GetLargestPossibleRegion()); - output->SetOrigin(input1->GetOrigin()); - output->SetSpacing(input1->GetSpacing()); - output->Allocate(); - // Set output iterator - typedef itk::ImageRegionIterator IteratorOutputType; - IteratorOutputType ito = IteratorOutputType(output, output->GetLargestPossibleRegion()); - if (mIsOperationUseASecondImage) ComputeImage(it, it2, ito); - else ComputeImage(it, ito); - this->template SetNextOutput(output); - } + this->template SetNextOutput(output); + } else { + // Create output image + typedef ImageType OutputImageType; + typename OutputImageType::Pointer output = OutputImageType::New(); + output->SetRegions(input1->GetLargestPossibleRegion()); + output->SetOrigin(input1->GetOrigin()); + output->SetSpacing(input1->GetSpacing()); + output->Allocate(); + // Set output iterator + typedef itk::ImageRegionIterator IteratorOutputType; + IteratorOutputType ito = IteratorOutputType(output, output->GetLargestPossibleRegion()); + if (mIsOperationUseASecondImage) ComputeImage(it, it2, ito); + else ComputeImage(it, ito); + this->template SetNextOutput(output); } } - //-------------------------------------------------------------------- +} +//-------------------------------------------------------------------- - //-------------------------------------------------------------------- - template - template - void ImageArithmGenericFilter::ComputeImage(Iter1 it1, Iter2 it2, Iter3 ito) { - it1.GoToBegin(); - it2.GoToBegin(); - ito.GoToBegin(); - typedef typename Iter3::PixelType PixelType; - - switch (mTypeOfOperation) { - case 0: // Addition - while (!ito.IsAtEnd()) { - ito.Set(PixelTypeDownCast((double)it1.Get() + (double)it2.Get()) ); - ++it1; ++it2; ++ito; - } - break; - case 1: // Multiply - while (!ito.IsAtEnd()) { - ito.Set(PixelTypeDownCast((double)it1.Get() * (double)it2.Get()) ); - ++it1; ++it2; ++ito; - } - break; - case 2: // Divide - while (!ito.IsAtEnd()) { - if (it1.Get() != 0) - ito.Set(PixelTypeDownCast((double)it1.Get() / (double)it2.Get())); - else ito.Set(mDefaultPixelValue); - ++it1; ++it2; ++ito; - } - break; - case 3: // Max - while (!ito.IsAtEnd()) { - if (it1.Get() < it2.Get()) ito.Set(PixelTypeDownCast(it2.Get())); - ++it1; ++it2; ++ito; - } - break; - case 4: // Min - while (!ito.IsAtEnd()) { - if (it1.Get() > it2.Get()) ito.Set(PixelTypeDownCast(it2.Get())); - ++it1; ++it2; ++ito; - } - break; - case 5: // Absolute difference - while (!ito.IsAtEnd()) { - ito.Set(PixelTypeDownCast(fabs((double)it2.Get()-(double)it1.Get()))); - ++it1; ++it2; ++ito; - } - break; - case 6: // Squared differences - while (!ito.IsAtEnd()) { - ito.Set(PixelTypeDownCast(pow((double)it1.Get()-(double)it2.Get(),2))); - ++it1; ++it2; ++ito; - } - break; - case 7: // Difference - while (!ito.IsAtEnd()) { - ito.Set(PixelTypeDownCast((double)it1.Get()-(double)it2.Get())); - ++it1; ++it2; ++ito; - } - break; - case 8: // Relative Difference - while (!ito.IsAtEnd()) { - if (it1.Get() != 0) ito.Set(PixelTypeDownCast(((double)it1.Get()-(double)it2.Get()))/(double)it1.Get()); - else ito.Set(0.0); - ++it1; ++it2; ++ito; - } - break; - default: // error ? - std::cerr << "ERROR : the operation number (" << mTypeOfOperation << ") is not known." << std::endl; - exit(-1); +//-------------------------------------------------------------------- +template +template +void ImageArithmGenericFilter::ComputeImage(Iter1 it1, Iter2 it2, Iter3 ito) +{ + it1.GoToBegin(); + it2.GoToBegin(); + ito.GoToBegin(); + typedef typename Iter3::PixelType PixelType; + + switch (mTypeOfOperation) { + case 0: // Addition + while (!ito.IsAtEnd()) { + ito.Set(PixelTypeDownCast((double)it1.Get() + (double)it2.Get()) ); + ++it1; + ++it2; + ++ito; + } + break; + case 1: // Multiply + while (!ito.IsAtEnd()) { + ito.Set(PixelTypeDownCast((double)it1.Get() * (double)it2.Get()) ); + ++it1; + ++it2; + ++ito; + } + break; + case 2: // Divide + while (!ito.IsAtEnd()) { + if (it1.Get() != 0) + ito.Set(PixelTypeDownCast((double)it1.Get() / (double)it2.Get())); + else ito.Set(mDefaultPixelValue); + ++it1; + ++it2; + ++ito; + } + break; + case 3: // Max + while (!ito.IsAtEnd()) { + if (it1.Get() < it2.Get()) ito.Set(PixelTypeDownCast(it2.Get())); + ++it1; + ++it2; + ++ito; } + break; + case 4: // Min + while (!ito.IsAtEnd()) { + if (it1.Get() > it2.Get()) ito.Set(PixelTypeDownCast(it2.Get())); + ++it1; + ++it2; + ++ito; + } + break; + case 5: // Absolute difference + while (!ito.IsAtEnd()) { + ito.Set(PixelTypeDownCast(fabs((double)it2.Get()-(double)it1.Get()))); + ++it1; + ++it2; + ++ito; + } + break; + case 6: // Squared differences + while (!ito.IsAtEnd()) { + ito.Set(PixelTypeDownCast(pow((double)it1.Get()-(double)it2.Get(),2))); + ++it1; + ++it2; + ++ito; + } + break; + case 7: // Difference + while (!ito.IsAtEnd()) { + ito.Set(PixelTypeDownCast((double)it1.Get()-(double)it2.Get())); + ++it1; + ++it2; + ++ito; + } + break; + case 8: // Relative Difference + while (!ito.IsAtEnd()) { + if (it1.Get() != 0) ito.Set(PixelTypeDownCast(((double)it1.Get()-(double)it2.Get()))/(double)it1.Get()); + else ito.Set(0.0); + ++it1; + ++it2; + ++ito; + } + break; + default: // error ? + std::cerr << "ERROR : the operation number (" << mTypeOfOperation << ") is not known." << std::endl; + exit(-1); } - //-------------------------------------------------------------------- +} +//-------------------------------------------------------------------- - //-------------------------------------------------------------------- - template - template - void clitk::ImageArithmGenericFilter::ComputeImage(Iter1 it, Iter2 ito) { - ito.GoToBegin(); - it.GoToBegin(); - typedef typename Iter2::PixelType PixelType; +//-------------------------------------------------------------------- +template +template +void clitk::ImageArithmGenericFilter::ComputeImage(Iter1 it, Iter2 ito) +{ + ito.GoToBegin(); + it.GoToBegin(); + typedef typename Iter2::PixelType PixelType; - // Perform operation - switch (mTypeOfOperation) { - case 0: // Addition - while (!it.IsAtEnd()) { - ito.Set(clitk::PixelTypeDownCast((double)it.Get() + mScalar) ); - ++it; ++ito; - } - break; - case 1: // Multiply - while (!it.IsAtEnd()) { - ito.Set(PixelTypeDownCast((double)it.Get() * mScalar) ); - ++it; ++ito; - } - break; - case 2: // Inverse - while (!it.IsAtEnd()) { - if (it.Get() != 0) - ito.Set(PixelTypeDownCast(mScalar / (double)it.Get())); - else ito.Set(mDefaultPixelValue); - ++it; ++ito; - } - break; - case 3: // Max - while (!it.IsAtEnd()) { - if (it.Get() < mScalar) ito.Set(PixelTypeDownCast(mScalar)); - else ito.Set(PixelTypeDownCast(it.Get())); - ++it; ++ito; - } - break; - case 4: // Min - while (!it.IsAtEnd()) { - if (it.Get() > mScalar) ito.Set(PixelTypeDownCast(mScalar)); - else ito.Set(PixelTypeDownCast(it.Get())); - ++it; ++ito; - } - break; - case 5: // Absolute value - while (!it.IsAtEnd()) { - if (it.Get() <= 0) ito.Set(PixelTypeDownCast(-it.Get())); - // <= zero to avoid warning for unsigned types - else ito.Set(PixelTypeDownCast(it.Get())); - ++it; ++ito; - } - break; - case 6: // Squared value - while (!it.IsAtEnd()) { - ito.Set(PixelTypeDownCast((double)it.Get()*(double)it.Get())); - ++it; ++ito; - } - break; - case 7: // Log - while (!it.IsAtEnd()) { - if (it.Get() > 0) - ito.Set(PixelTypeDownCast(log((double)it.Get()))); + // Perform operation + switch (mTypeOfOperation) { + case 0: // Addition + while (!it.IsAtEnd()) { + ito.Set(clitk::PixelTypeDownCast((double)it.Get() + mScalar) ); + ++it; + ++ito; + } + break; + case 1: // Multiply + while (!it.IsAtEnd()) { + ito.Set(PixelTypeDownCast((double)it.Get() * mScalar) ); + ++it; + ++ito; + } + break; + case 2: // Inverse + while (!it.IsAtEnd()) { + if (it.Get() != 0) + ito.Set(PixelTypeDownCast(mScalar / (double)it.Get())); + else ito.Set(mDefaultPixelValue); + ++it; + ++ito; + } + break; + case 3: // Max + while (!it.IsAtEnd()) { + if (it.Get() < mScalar) ito.Set(PixelTypeDownCast(mScalar)); + else ito.Set(PixelTypeDownCast(it.Get())); + ++it; + ++ito; + } + break; + case 4: // Min + while (!it.IsAtEnd()) { + if (it.Get() > mScalar) ito.Set(PixelTypeDownCast(mScalar)); + else ito.Set(PixelTypeDownCast(it.Get())); + ++it; + ++ito; + } + break; + case 5: // Absolute value + while (!it.IsAtEnd()) { + if (it.Get() <= 0) ito.Set(PixelTypeDownCast(-it.Get())); + // <= zero to avoid warning for unsigned types + else ito.Set(PixelTypeDownCast(it.Get())); + ++it; + ++ito; + } + break; + case 6: // Squared value + while (!it.IsAtEnd()) { + ito.Set(PixelTypeDownCast((double)it.Get()*(double)it.Get())); + ++it; + ++ito; + } + break; + case 7: // Log + while (!it.IsAtEnd()) { + if (it.Get() > 0) + ito.Set(PixelTypeDownCast(log((double)it.Get()))); + else ito.Set(mDefaultPixelValue); + ++it; + ++ito; + } + break; + case 8: // exp + while (!it.IsAtEnd()) { + ito.Set(PixelTypeDownCast(exp((double)it.Get()))); + ++it; + ++ito; + } + break; + case 9: // sqrt + while (!it.IsAtEnd()) { + if (it.Get() > 0) + ito.Set(PixelTypeDownCast(sqrt((double)it.Get()))); + else { + if (it.Get() ==0) ito.Set(0); else ito.Set(mDefaultPixelValue); - ++it; ++ito; - } - break; - case 8: // exp - while (!it.IsAtEnd()) { - ito.Set(PixelTypeDownCast(exp((double)it.Get()))); - ++it; ++ito; } - break; - case 9: // sqrt - while (!it.IsAtEnd()) { - if (it.Get() > 0) - ito.Set(PixelTypeDownCast(sqrt((double)it.Get()))); - else { - if (it.Get() ==0) ito.Set(0); - else ito.Set(mDefaultPixelValue); - } - ++it; ++ito; - } - break; - default: // error ? - std::cerr << "ERROR : the operation number (" << mTypeOfOperation << ") is not known." << std::endl; - exit(-1); + ++it; + ++ito; } + break; + default: // error ? + std::cerr << "ERROR : the operation number (" << mTypeOfOperation << ") is not known." << std::endl; + exit(-1); } - //-------------------------------------------------------------------- +} +//-------------------------------------------------------------------- } // end namespace