X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=filters%2FclitkImageFillRegionGenericFilter.cxx;h=dd5a51ab667d6db2b32b9bdff2d889ef577932fc;hb=8abe9edbdc63a33f8fbb1f321073b762e08be9aa;hp=59bbff4f85921a622b713b35b0b6f0a8b21d6c02;hpb=931a42358442f4ee4f314613c991c838d4b4e3b7;p=clitk.git

diff --git a/filters/clitkImageFillRegionGenericFilter.cxx b/filters/clitkImageFillRegionGenericFilter.cxx
index 59bbff4..dd5a51a 100644
--- a/filters/clitkImageFillRegionGenericFilter.cxx
+++ b/filters/clitkImageFillRegionGenericFilter.cxx
@@ -1,31 +1,39 @@
 /*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
 
-  Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
-  l'Image). All rights reserved. See Doc/License.txt or
-  http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
-                                                                                
-     This software is distributed WITHOUT ANY WARRANTY; without even
-     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-     PURPOSE.  See the above copyright notices for more information.
-                                                                             
-=========================================================================*/
+  Authors belong to:
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+======================================================================-====*/
 #ifndef CLITKIMAGEFILLREGIONGENERICFILTER_CXX
 #define CLITKIMAGEFILLREGIONGENERICFILTER_CXX
-
 /**
  -------------------------------------------------------------------
  * @file   clitkImageFillRegionGenericFilter.cxx
  * @author David Sarrut <David.Sarrut@creatis.insa-lyon.fr>
  * @date   23 Feb 2008
 
- * @brief  
+ * @brief
  -------------------------------------------------------------------*/
 
 #include "clitkImageFillRegionGenericFilter.h"
 
 //--------------------------------------------------------------------
-clitk::ImageFillRegionGenericFilter::ImageFillRegionGenericFilter() {
+clitk::ImageFillRegionGenericFilter::ImageFillRegionGenericFilter():
+  clitk::ImageToImageGenericFilter<Self>("ImageFillRegion")
+{
+  InitializeImageType<2>();
+  InitializeImageType<3>();
   mPixelValue = 0;
   m_IsCentered=false;
   mSphericRegion=false;
@@ -34,10 +42,131 @@ clitk::ImageFillRegionGenericFilter::ImageFillRegionGenericFilter() {
 
 
 //--------------------------------------------------------------------
-void clitk::ImageFillRegionGenericFilter::SetSphericRegion(std::vector<double> &  radius, 
-  							   std::vector<double> & center) 
+template<unsigned int Dim>
+void clitk::ImageFillRegionGenericFilter::InitializeImageType()
+{
+  // ADD_IMAGE_TYPE(Dim, char);
+  ADD_IMAGE_TYPE(Dim, short);
+  // ADD_IMAGE_TYPE(Dim, unsigned short);
+//   ADD_IMAGE_TYPE(Dim, int);
+  ADD_IMAGE_TYPE(Dim, float);
+  // ADD_IMAGE_TYPE(Dim, double);
+}
+//--------------------------------------------------------------------
+
+
+
+//--------------------------------------------------------------------
+template<class ImageType>
+void clitk::ImageFillRegionGenericFilter::UpdateWithInputImageType()
+{
+
+  // Typedef
+  typedef typename ImageType::PixelType PixelType;
+  static unsigned int Dim = ImageType::ImageDimension;
+
+  // Spheric region
+  if (mSphericRegion) return Update_WithDimAndPixelType_SphericRegion<ImageType::ImageDimension,PixelType>();
+
+  // Read input
+  typename ImageType::Pointer input = GetInput<ImageType>(0);
+
+  // Get pixel value in correct type
+  PixelType value = PixelTypeDownCast<double, PixelType>(mPixelValue);
+
+  // Get region
+  typedef typename ImageType::RegionType RegionType;
+  typedef typename ImageType::SizeType SizeType;
+  typedef typename ImageType::IndexType IndexType;
+  RegionType region;
+  SizeType size;
+  IndexType start;
+  for(unsigned int i=0; i<Dim; i++) {
+    size[i] = mSize[i];
+    start[i] = mStart[i];
+  }
+  region.SetSize(size);
+  region.SetIndex(start);
+
+  // Build iterator
+  typedef itk::ImageRegionIterator<ImageType> IteratorType;
+  IteratorType it(input, region);
+  it.GoToBegin();
+  while (!it.IsAtEnd()) {
+    it.Set(value);
+    ++it;
+  }
+
+  // Write results
+  SetNextOutput<ImageType>(input);
+}
+//--------------------------------------------------------------------
+
+//--------------------------------------------------------------------
+template<unsigned int Dim, class PixelType>
+void clitk::ImageFillRegionGenericFilter::Update_WithDimAndPixelType_SphericRegion()
 {
-  mRadius.clear(); 
+
+  // Read input
+  typedef itk::Image<PixelType,Dim> ImageType;
+  //typename ImageType::Pointer input = clitk::readImage<ImageType>(mInputFilenames[0], mIOVerbose);
+  typename ImageType::Pointer input = GetInput<ImageType>(0);
+
+  // Get pixel value in correct type
+  PixelType value = PixelTypeDownCast<double, PixelType>(mPixelValue);
+
+  // Centered?
+  if(m_IsCentered) {
+    typename ImageType::SizeType size= input->GetLargestPossibleRegion().GetSize();
+    typename ImageType::SpacingType spacing= input->GetSpacing();
+    typename ImageType::PointType origin= input->GetOrigin();
+    mCenter.resize(Dim);
+    for (unsigned int i=0; i<Dim; i++)
+      mCenter[i]=origin[i]+(double)size[i]/2*spacing[i];
+  }
+
+  // Build iterator
+  typedef itk::ImageRegionIteratorWithIndex<ImageType> IteratorType;
+  IteratorType it(input, input->GetLargestPossibleRegion());
+  it.GoToBegin();
+
+  typename ImageType::PointType point;
+  //typename itk::Vector<double, Dim> distance;
+  typename ImageType::IndexType index;
+  //bool inside;
+  double distance;
+
+  while (!it.IsAtEnd()) {
+    //      inside=true;
+    index=it.GetIndex();
+    input->TransformIndexToPhysicalPoint(index, point);
+    distance=0.0;
+    for(unsigned int i=0; i<Dim; i++)
+      distance+=powf( ( (mCenter[i]-point[i])/mRadius[i] ), 2);
+
+    //  inside= ( (fabs(distance[i])<fabs(mRadius[i])) && inside );
+    // 	  distance[i]=mCenter[i]-point[i];
+    // 	  inside= ( (fabs(distance[i])<fabs(mRadius[i])) && inside );
+    //	}
+
+    if (distance<1)
+      it.Set(value);
+    ++it;
+  }
+
+  // Write results
+  SetNextOutput<ImageType>(input);
+}
+
+//--------------------------------------------------------------------
+
+
+
+//--------------------------------------------------------------------
+void clitk::ImageFillRegionGenericFilter::SetSphericRegion(std::vector<double> &  radius,
+    std::vector<double> & center)
+{
+  mRadius.clear();
   mRadius.resize(radius.size());
   std::copy(radius.begin(), radius.end(), mRadius.begin());
   mCenter.clear();
@@ -47,8 +176,9 @@ void clitk::ImageFillRegionGenericFilter::SetSphericRegion(std::vector<double> &
   m_IsCentered=false;
 }
 
-void clitk::ImageFillRegionGenericFilter::SetSphericRegion(std::vector<double> & radius) {
-  mRadius.clear(); 
+void clitk::ImageFillRegionGenericFilter::SetSphericRegion(std::vector<double> & radius)
+{
+  mRadius.clear();
   mRadius.resize(radius.size());
   std::copy(radius.begin(), radius.end(), mRadius.begin());
   m_IsCentered=true;
@@ -57,25 +187,4 @@ void clitk::ImageFillRegionGenericFilter::SetSphericRegion(std::vector<double> &
 //--------------------------------------------------------------------
 
 
-//--------------------------------------------------------------------
-void clitk::ImageFillRegionGenericFilter::Update () {
-  
-  // Load image header
-  itk::ImageIOBase::Pointer header = clitk::readImageHeader(mInputFilenames[0]);
-  
-  // Determine dim, pixel type, number of components
-  mDim = header->GetNumberOfDimensions();
-  mPixelTypeName = header->GetComponentTypeAsString(header->GetComponentType());  
-  mNbOfComponents = header->GetNumberOfComponents();
-  
-  // Switch by dimension
-  if (mDim == 2) { Update_WithDim<2>(); return; }
-  if (mDim == 3) { Update_WithDim<3>(); return; }
-  // if (mDim == 4) { Update_WithDim<4>(); return; }
-
-  std::cerr << "Error, dimension of input image is " << mDim << ", but I only work with 2,3,4." << std::endl;
-  exit(0);
-}
-//--------------------------------------------------------------------
-
 #endif //define CLITKIMAGEFILLREGIONGENERICFILTER_CXX