X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=gdcmPython%2Fgdcm.i;h=8c2d95d369ffa593eae0c49909b7f904d1319db8;hb=726b8eea9b427fb1e04e2cdf64933d0128f9e791;hp=b731ceddb63b0b610915d2dde5ce17d0049913f4;hpb=b442d0142cdd33c0d02fd3fa6e57138a7c4a9e0a;p=gdcm.git diff --git a/gdcmPython/gdcm.i b/gdcmPython/gdcm.i index b731cedd..8c2d95d3 100644 --- a/gdcmPython/gdcm.i +++ b/gdcmPython/gdcm.i @@ -1,256 +1,209 @@ %module gdcm +#pragma SWIG nowarn=504,510 %{ +#include + #include "gdcmCommon.h" -#include "gdcmDictEntry.h" +#include "gdcmBase.h" +#include "gdcmRefCounter.h" +#include "gdcmCommand.h" +#include "gdcmCommandPy.h" +#include "gdcmDebug.h" +#include "gdcmCommandManager.h" +#include "gdcmTagKey.h" +#include "gdcmVRKey.h" #include "gdcmDict.h" +#include "gdcmDictEntry.h" #include "gdcmDictSet.h" -#include "gdcmParser.h" -#include "gdcmHeaderEntry.h" -#include "gdcmHeader.h" -#include "gdcmHeaderHelper.h" -#include "gdcmFile.h" -#include "gdcmUtil.h" -#include "gdcmObject.h" #include "gdcmDicomDir.h" #include "gdcmDicomDirElement.h" -#include "gdcmMeta.h" -#include "gdcmPatient.h" -#include "gdcmStudy.h" -#include "gdcmSerie.h" -#include "gdcmImage.h" - -using namespace std; - -//////////////////////////////////////////////////////////////////////////// -// Utility functions on strings for removing leading and trailing spaces -void EatLeadingAndTrailingSpaces(string & s) { - while ( s.length() && (s[0] == ' ') ) - s.erase(0,1); - while ( s.length() && (s[s.length()-1] == ' ') ) - s.erase(s.length()-1, 1); -} - -void vtkPythonVoidFunc(void *arg) -{ - PyObject *arglist, *result; - PyObject *func = (PyObject *)arg; - - arglist = Py_BuildValue("()"); - - result = PyEval_CallObject(func, arglist); - Py_DECREF(arglist); - - if (result) - { - Py_XDECREF(result); - } - else - { - if (PyErr_ExceptionMatches(PyExc_KeyboardInterrupt)) - { - cerr << "Caught a Ctrl-C within python, exiting program.\n"; - Py_Exit(1); - } - PyErr_Print(); - } -} - -void vtkPythonVoidFuncArgDelete(void *arg) -{ - PyObject *func = (PyObject *)arg; - if (func) - { - Py_DECREF(func); - } -} - +#include "gdcmDicomDirImage.h" +#include "gdcmDicomDirMeta.h" +#include "gdcmDicomDirObject.h" +#include "gdcmDicomDirPatient.h" +#include "gdcmDicomDirStudy.h" +#include "gdcmDicomDirSerie.h" +#include "gdcmDocEntrySet.h" +#include "gdcmDocument.h" +#include "gdcmElementSet.h" +#include "gdcmFileHelper.h" +#include "gdcmGlobal.h" +#include "gdcmFile.h" +#include "gdcmSerieHelper.h" +#include "gdcmRLEFramesInfo.h" +#include "gdcmJPEGFragmentsInfo.h" +#include "gdcmSQItem.h" +#include "gdcmUtil.h" +#include "gdcmDocEntry.h" +#include "gdcmDataEntry.h" +#include "gdcmSeqEntry.h" +#include "gdcmVR.h" +#include "gdcmTS.h" +#include "gdcmDictGroupName.h" + +/// This is required in order to avoid %including all the gdcm include files. +using namespace gdcm; %} -typedef unsigned short guint16; -typedef unsigned int guint32; - -//////////////////////////////////////////////////////////////////////////// -// Global variables get exported to cvar in Python -%immutable; -extern gdcmGlobal gdcmGlob; -%mutable; - -//////////////////////////////////////////////////////////////////////////// -%typemap(out) std::list * { - PyObject* NewItem = (PyObject*)0; - PyObject* NewList = PyList_New(0); // The result of this typemap - for (list::iterator NewString = ($1)->begin(); - NewString != ($1)->end(); ++NewString) { - NewItem = PyString_FromString(NewString->c_str()); - PyList_Append( NewList, NewItem); - } - $result = NewList; -} - -//////////////////////////////////////////////////////////////////////////// -// Convert a c++ hash table in a python native dictionary -%typemap(out) std::map > * { - PyObject* NewDict = PyDict_New(); // The result of this typemap - PyObject* NewKey = (PyObject*)0; - PyObject* NewVal = (PyObject*)0; - - for (map >::iterator tag = ($1)->begin(); - tag != ($1)->end(); ++tag) { - string first = tag->first; - // Do not publish entries whose keys is made of spaces - if (first.length() == 0) - continue; - NewKey = PyString_FromString(first.c_str()); - PyObject* NewList = PyList_New(0); - for (list::iterator Item = tag->second.begin(); - Item != tag->second.end(); ++Item) { - NewVal = PyString_FromString(Item->c_str()); - PyList_Append( NewList, NewVal); - } - PyDict_SetItem( NewDict, NewKey, NewList); - } - $result = NewDict; -} - -//////////////////////////////////////////////////////////////////////////// -// Convert a c++ hash table in a python native dictionary -%typemap(out) TagHeaderEntryHT & { - PyObject* NewDict = PyDict_New(); // The result of this typemap - string RawName; // Element name as gotten from gdcm - PyObject* NewKey = (PyObject*)0; // Associated name as python object - string RawValue; // Element value as gotten from gdcm - PyObject* NewVal = (PyObject*)0; // Associated value as python object - for (TagHeaderEntryHT::iterator tag = $1->begin(); tag != $1->end(); ++tag) { - // The element name shall be the key: - RawName = tag->second->GetName(); - // gdcm unrecognized (including not loaded because their size exceeds - // the user specified treshold) elements are exported with their - // TagKey as key. - if (RawName == "Unknown") - RawName = tag->second->GetKey(); - NewKey = PyString_FromString(RawName.c_str()); +/////////////////////// typemap section //////////////////////////////////// - // Element values are striped from leading/trailing spaces - RawValue = tag->second->GetValue(); - EatLeadingAndTrailingSpaces(RawValue); - NewVal = PyString_FromString(RawValue.c_str()); +//////////////////////////////////////////////// +// Redefine all types used +typedef char int8_t; +typedef unsigned char uint8_t; +typedef short int16_t; +typedef unsigned short uint16_t; +typedef int int32_t; +typedef unsigned int uint32_t; +typedef long long int64_t; +typedef unsigned long long uint64_t; - PyDict_SetItem( NewDict, NewKey, NewVal); - } - $result = NewDict; +//////////////////////////////////////////////// +// Convert a DocEntry * to the real derived class +%typemap(out) gdcm::DocEntry * +{ + PyObject *newEntry; + + if($1) + { + if(dynamic_cast($1)) // SeqEntry * + newEntry = SWIG_NewPointerObj($1,SWIGTYPE_p_gdcm__SeqEntry,0); + else if(dynamic_cast($1)) // DataEntry * + newEntry = SWIG_NewPointerObj($1,SWIGTYPE_p_gdcm__DataEntry,0); + else + newEntry = NULL; + } + else + { + newEntry = Py_BuildValue(""); + } + $result = newEntry; } -%typemap(out) TagHeaderEntryHT { - PyObject* NewDict = PyDict_New(); // The result of this typemap - string RawName; // Element name as gotten from gdcm - PyObject* NewKey = (PyObject*)0; // Associated name as python object - string RawValue; // Element value as gotten from gdcm - PyObject* NewVal = (PyObject*)0; // Associated value as python object - - for (TagHeaderEntryHT::iterator tag = $1.begin(); tag != $1.end(); ++tag) { - - // The element name shall be the key: - RawName = tag->second->GetName(); - // gdcm unrecognized (including not loaded because their size exceeds - // the user specified treshold) elements are exported with their - // TagKey as key. - if (RawName == "Unknown") - RawName = tag->second->GetKey(); - NewKey = PyString_FromString(RawName.c_str()); - - // Element values are striped from leading/trailing spaces - RawValue = tag->second->GetValue(); - EatLeadingAndTrailingSpaces(RawValue); - NewVal = PyString_FromString(RawValue.c_str()); - - PyDict_SetItem( NewDict, NewKey, NewVal); - } - $result = NewDict; +//////////////////// STL string versus Python str //////////////////////// +// Convertion returning a C++ string. +%typemap(out) std::string +{ + $result = PyString_FromString(($1).c_str()); } -//////////////////////////////////////////////////////////////////////////// -%typemap(out) ListPatient & { - PyObject* NewItem = (PyObject*)0; - $result = PyList_New(0); // The result of this typemap - - for (list::iterator New = ($1)->begin(); - New != ($1)->end(); ++New) { - NewItem = SWIG_NewPointerObj(*New,SWIGTYPE_p_gdcmPatient,1); - PyList_Append($result, NewItem); - } +%typemap(out) string +{ + $result = PyString_FromString(($1).c_str()); } -%typemap(out) ListStudy & { - PyObject* NewItem = (PyObject*)0; - $result = PyList_New(0); // The result of this typemap - - for (list::iterator New = ($1)->begin(); - New != ($1)->end(); ++New) { - NewItem = SWIG_NewPointerObj(*New,SWIGTYPE_p_gdcmStudy,1); - PyList_Append($result, NewItem); - } +%typemap(out) std::string const & +{ + $result = PyString_FromString(($1)->c_str()); } -%typemap(out) ListSerie & { - PyObject* NewItem = (PyObject*)0; - $result = PyList_New(0); // The result of this typemap - - for (list::iterator New = ($1)->begin(); - New != ($1)->end(); ++New) { - NewItem = SWIG_NewPointerObj(*New,SWIGTYPE_p_gdcmSerie,1); - PyList_Append($result, NewItem); - } +// Convertion of incoming Python str to STL string +%typemap(python, in) const std::string, std::string +{ + $1 = PyString_AsString($input); } -%typemap(out) ListImage & { - PyObject* NewItem = (PyObject*)0; - $result = PyList_New(0); // The result of this typemap - - for (list::iterator New = ($1)->begin(); - New != ($1)->end(); ++New) { - NewItem = SWIG_NewPointerObj(*New,SWIGTYPE_p_gdcmImage,1); - PyList_Append($result, NewItem); - } +// Same convertion as above but references (since swig converts C++ +// refererences to pointers) +%typemap(python, in) std::string const & +{ + $1 = new std::string( PyString_AsString( $input ) ); } -//////////////////////////////////////////////////////////////////////////// -// Deals with function returning a C++ string. -%typemap(python, in) (gdcmMethod *,void * =NULL,gdcmMethod * =NULL) { - Py_INCREF($input); - $1=vtkPythonVoidFunc; - $2=$input; - $3=vtkPythonVoidFuncArgDelete; +//////////////////// gdcm.TagName versus Python str ////////////////////// +%typemap(out) gdcm::TagName, const gdcm::TagName & +{ + $result = PyString_FromString(($1)->c_str()); } - -//////////////////////////////////////////////////////////////////////////// -// Deals with function returning a C++ string. -%typemap(out) string, std::string { - $result = PyString_FromString(($1).c_str()); +// Convertion of incoming Python str to STL string +%typemap(python, in) const gdcm::TagName, gdcm::TagName +{ + $1 = PyString_AsString($input); } -%typemap(python, in) const std::string, std::string +// Same convertion as above but references (since swig converts C++ +// refererences to pointers) +%typemap(python, in) gdcm::TagName const & { - $1 = PyString_AsString($input); + $1 = new std::string( PyString_AsString( $input ) ); } //////////////////////////////////////////////////////////////////////////// +// Because overloading and %rename don't work together (see below Note 1) +// we need to ignore some methods (e.g. the overloaded default constructor). +// The gdcm::File class doesn't have any SetFilename method anyhow, and +// this constructor is only used internaly (not from the API) so this is +// not a big loss. +%ignore gdcm::binary_write(std::ostream &,uint32_t const &); +%ignore gdcm::binary_write(std::ostream &,uint16_t const &); + +%ignore gdcm::VRKey::operator=(const VRKey &_val); +%ignore gdcm::VRKey::operator=(const std::string &_val); +%ignore gdcm::VRKey::operator=(const char *_val); +%ignore gdcm::VRKey::operator[](const unsigned int &_id) const; +%ignore gdcm::VRKey::operator[](const unsigned int &_id); + +%ignore gdcm::TagKey::operator=(const TagKey &_val); +%ignore gdcm::TagKey::operator[](const unsigned int &_id) const; +%ignore gdcm::TagKey::operator[](const unsigned int &_id); + +// Ignore all placed in gdcmCommon.h +%ignore GDCM_UNKNOWN; +%ignore GDCM_UNFOUND; +%ignore GDCM_BINLOADED; +%ignore GDCM_NOTLOADED; +%ignore GDCM_UNREAD; +%ignore GDCM_NOTASCII; +%ignore GDCM_PIXELDATA; +%ignore GDCM_LEGACY; +%ignore GDCM_VRUNKNOWN; +%ignore GDCM_FILESEPARATOR; + +%constant const char *UNKNOWN = "gdcm::Unknown"; +%constant const char *UNFOUND = "gdcm::Unfound"; +%constant const char *BINLOADED = "gdcm::Binary data loaded"; +%constant const char *NOTLOADED = "gdcm::NotLoaded"; +%constant const char *UNREAD = "gdcm::UnRead"; +%constant const char *GDCM_NOTASCII = "gdcm::NotAscii"; +%constant const char *GDCM_PIXELDATA = "gdcm::Pixel Data to be loaded"; +%constant const char *VRUNKNOWN = " "; +%constant const char GDCM_FILESEPARATOR = '\\'; +//////////////////////////////////////////////////////////////////////////// +// Warning: Order matters ! %include "gdcmCommon.h" +%include "gdcmBase.h" +%include "gdcmRefCounter.h" +%include "gdcmCommand.h" +%include "gdcmCommandPy.h" +%include "gdcmDebug.h" +%include "gdcmCommandManager.h" +%include "gdcmTagKey.h" +%include "gdcmVRKey.h" %include "gdcmDictEntry.h" %include "gdcmDict.h" %include "gdcmDictSet.h" -%include "gdcmParser.h" -%include "gdcmHeaderEntry.h" -%include "gdcmHeader.h" -%include "gdcmHeaderHelper.h" +%include "gdcmDocEntrySet.h" +%include "gdcmElementSet.h" +%include "gdcmSQItem.h" +%include "gdcmDicomDirElement.h" +%include "gdcmDicomDirObject.h" +%include "gdcmDicomDirImage.h" +%include "gdcmDicomDirSerie.h" +%include "gdcmDicomDirStudy.h" +%include "gdcmDicomDirPatient.h" +%include "gdcmDicomDirMeta.h" +%include "gdcmDocument.h" %include "gdcmFile.h" +%include "gdcmSerieHelper.h" +%include "gdcmFileHelper.h" %include "gdcmUtil.h" -%include "gdcmObject.h" +%include "gdcmGlobal.h" %include "gdcmDicomDir.h" -%include "gdcmDicomDirElement.h" -%include "gdcmMeta.h" -%include "gdcmPatient.h" -%include "gdcmStudy.h" -%include "gdcmSerie.h" -%include "gdcmImage.h" +%include "gdcmDocEntry.h" +%include "gdcmDataEntry.h" +%include "gdcmSeqEntry.h" +%include "gdcmVR.h" +%include "gdcmTS.h" +%include "gdcmDictGroupName.h"