X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=grid%2Fcommon.sh;h=62205e72135b0eb9105d7d03fcb2d12521dc91d0;hb=fae205f8ac8ecaa3272d59d7e3d2995a37ded542;hp=c466050077c53d5b93f20bc216fdbd292d367084;hpb=1f5bb620cbb7768762c16914775fa7412b431c5b;p=clitk.git

diff --git a/grid/common.sh b/grid/common.sh
index c466050..62205e7 100644
--- a/grid/common.sh
+++ b/grid/common.sh
@@ -27,16 +27,35 @@ test "${answer}" == "n" && return 1
 check_user "${prompt}"
 }
 
+# checks if the lfn file exists
 function file_exists {
 lfnfile="${1:?"provide lfn to file"}"
 lfc-ls ${lfnfile} 2>&1 > /dev/null
 }
 
+# upload file to grid storage element
+# source can be a relative or an absolute path to the source file 
+# dest must be the lfn to the target **file** (not the directory) 
+# if dest already exists, it prompts the user for overwritting
+function upload_file {
+sourcefile=${1:?"provide source file"}
+destlfn=${2:?"provide destination file lfn"}
+sourcefile="$(readlink -f "${sourcefile}")" # convert to absolute path
+test -f "${sourcefile}" || error "can't find ${sourcefile}"
+echo "uploading ${sourcefile} to ${destlfn}"
+if file_exists "${destlfn}"; then
+	check_user "${destlfn} already exists. overwrite it?" || return 2
+	lcg-del -a "lfn:${destlfn}" || error "lcg-del error"
+fi
+echo "lets roll"
+lcg-cr -v -d ccsrm02.in2p3.fr -l "lfn:${destlfn}" "file:${sourcefile}" || error "lcg-cr error"
+}
+
 
 # common path used
 lfnbase="/grid/biomed/creatis/fgate/"
-lfnrelease="${lfnbase}releases/"
-lfnworkflow="${lfnbase}"
+lfnrelease="/grid/biomed/creatis/vip/data/groups/GateLab/releases/"
+lfnworkflow="${lfnbase}workflow/"
 lfngasw="${lfnbase}gasw/"
 lfnscript="${lfnbase}bin/"