X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=itk%2FclitkAddRelativePositionConstraintToLabelImageFilter.h;h=781775f0cc9541c488ca0ddfa4b8566b8ddc9779;hb=6986b996d66273ab7818c12f51cbf5ae049ac04e;hp=83400ef5b47db4400c726e7a2f914234de6e6b09;hpb=de2db2051ac9b17a5e3e2b7dc34f42deea3f1526;p=clitk.git

diff --git a/itk/clitkAddRelativePositionConstraintToLabelImageFilter.h b/itk/clitkAddRelativePositionConstraintToLabelImageFilter.h
index 83400ef..781775f 100644
--- a/itk/clitkAddRelativePositionConstraintToLabelImageFilter.h
+++ b/itk/clitkAddRelativePositionConstraintToLabelImageFilter.h
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,16 +14,17 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 #ifndef CLITKADDRELATIVEPOSITIONCONSTRAINTTOLABELIMAGEFILTER_H
 #define CLITKADDRELATIVEPOSITIONCONSTRAINTTOLABELIMAGEFILTER_H
 
 // clitk
 #include "clitkFilterBase.h"
+#include "clitkCropLikeImageFilter.h"
 
 // itk
-#include "itkPasteImageFilter.h"
+#include <itkPasteImageFilter.h>
 
 // itk ENST
 #include "RelativePositionPropImageFilter.h"
@@ -43,15 +44,15 @@ namespace clitk {
   */
   //--------------------------------------------------------------------
   
-  template <class TImageType>
+  template <class ImageType>
   class ITK_EXPORT AddRelativePositionConstraintToLabelImageFilter:
     public clitk::FilterBase, 
-    public itk::ImageToImageFilter<TImageType, TImageType> 
+    public itk::ImageToImageFilter<ImageType, ImageType> 
   {
 
   public:
     /** Standard class typedefs. */
-    typedef itk::ImageToImageFilter<TImageType, TImageType> Superclass;
+    typedef itk::ImageToImageFilter<ImageType, ImageType>      Superclass;
     typedef AddRelativePositionConstraintToLabelImageFilter    Self;
     typedef itk::SmartPointer<Self>                            Pointer;
     typedef itk::SmartPointer<const Self>                      ConstPointer;
@@ -64,16 +65,17 @@ namespace clitk {
     FILTERBASE_INIT;
 
     /** Some convenient typedefs. */
-    typedef TImageType                      ImageType;
     typedef typename ImageType::ConstPointer ImageConstPointer;
     typedef typename ImageType::Pointer      ImagePointer;
     typedef typename ImageType::RegionType   RegionType; 
     typedef typename ImageType::PixelType    PixelType;
     typedef typename ImageType::SpacingType  SpacingType;
     typedef typename ImageType::SizeType     SizeType;
+    typedef typename ImageType::IndexType    IndexType;
+    typedef typename ImageType::PointType    PointType;
     
     /** ImageDimension constants */
-    itkStaticConstMacro(ImageDimension, unsigned int, TImageType::ImageDimension);
+    itkStaticConstMacro(ImageDimension, unsigned int, ImageType::ImageDimension);
     typedef itk::Image<float, ImageDimension> FloatImageType;
 
     /** Orientation types */
@@ -87,45 +89,103 @@ namespace clitk {
     void SetInputObject(const ImageType * image);
     
     // Options
-    void SetOrientationType(OrientationTypeEnumeration orientation);
-    itkGetConstMacro(OrientationType, OrientationTypeEnumeration);
-    void SetAngle1(double a);
-    void SetAngle2(double a);
-    itkGetConstMacro(Angle1, double);
-    itkGetConstMacro(Angle2, double);
-    itkGetConstMacro(ResampleBeforeRelativePositionFilter, bool);
-    itkSetMacro(ResampleBeforeRelativePositionFilter, bool);
-    itkBooleanMacro(ResampleBeforeRelativePositionFilter);
+    void AddOrientationType(OrientationTypeEnumeration orientation);
+    void AddOrientationTypeString(std::string s);
+    void ClearOrientationType();
+    void AddAnglesInRad(double a, double b);
+    void AddAnglesInDeg(double a, double b);
+    double GetAngle1InRad(int i) { return m_Angle1[i]; }
+    double GetAngle2InRad(int i) { return m_Angle2[i]; }
+    int GetNumberOfAngles();
+    std::string GetOrientationTypeString(int i) { return m_OrientationTypeString[i]; }
+    std::vector<std::string> & GetOrientationTypeString() { return m_OrientationTypeString; }
+
+    itkGetConstMacro(IntermediateSpacingFlag, bool);
+    itkSetMacro(IntermediateSpacingFlag, bool);
+    itkBooleanMacro(IntermediateSpacingFlag);
+
     itkGetConstMacro(IntermediateSpacing, double);
     itkSetMacro(IntermediateSpacing, double);
+
     itkGetConstMacro(FuzzyThreshold, double);
     itkSetMacro(FuzzyThreshold, double);
+
     itkGetConstMacro(BackgroundValue, PixelType);
     itkSetMacro(BackgroundValue, PixelType);
+
     itkGetConstMacro(ObjectBackgroundValue, PixelType);
     itkSetMacro(ObjectBackgroundValue, PixelType);
 
+    itkGetConstMacro(AutoCropFlag, bool);
+    itkSetMacro(AutoCropFlag, bool);
+    itkBooleanMacro(AutoCropFlag);
+
+    itkGetConstMacro(InverseOrientationFlag, bool);
+    itkSetMacro(InverseOrientationFlag, bool);
+    itkBooleanMacro(InverseOrientationFlag);
+
+    itkGetConstMacro(RemoveObjectFlag, bool);
+    itkSetMacro(RemoveObjectFlag, bool);
+    itkBooleanMacro(RemoveObjectFlag);
+
+    itkGetConstMacro(CombineWithOrFlag, bool);
+    itkSetMacro(CombineWithOrFlag, bool);
+    itkBooleanMacro(CombineWithOrFlag);
+
+    itkGetConstMacro(FuzzyMapOnlyFlag, bool);
+    itkSetMacro(FuzzyMapOnlyFlag, bool);
+    itkBooleanMacro(FuzzyMapOnlyFlag);
+
+    itkGetConstMacro(FastFlag, bool);
+    itkSetMacro(FastFlag, bool);
+    itkBooleanMacro(FastFlag);
+
+    itkGetConstMacro(Radius, double);
+    itkSetMacro(Radius, double);
+
+    itkSetMacro(K1, double);
+    itkGetMacro(K1, double);
+
+    typename FloatImageType::Pointer GetFuzzyMap() { return m_FuzzyMap; }
+
+    // I dont want to verify inputs information
+    virtual void VerifyInputInformation() { }
+    
+    // For debug
+    void PrintOptions();
+
   protected:
     AddRelativePositionConstraintToLabelImageFilter();
     virtual ~AddRelativePositionConstraintToLabelImageFilter() {}
     
-    OrientationTypeEnumeration m_OrientationType;
+    std::vector<OrientationTypeEnumeration> m_OrientationType;
+    std::vector<std::string> m_OrientationTypeString;
     double m_IntermediateSpacing;
     double m_FuzzyThreshold;
     PixelType m_BackgroundValue;
     PixelType m_ObjectBackgroundValue;
-    double m_Angle1;
-    double m_Angle2;
-    bool m_ResampleBeforeRelativePositionFilter;
+    std::vector<double> m_Angle1;
+    std::vector<double> m_Angle2;
+    bool m_IntermediateSpacingFlag;
+    bool m_AutoCropFlag;
+    bool m_InverseOrientationFlag;
+    bool m_RemoveObjectFlag;
+    bool m_CombineWithOrFlag;
+    bool m_FuzzyMapOnlyFlag;
+    bool m_FastFlag;
+    double m_Radius;
+    double m_K1;
 
     virtual void GenerateOutputInformation();
     virtual void GenerateInputRequestedRegion();
     virtual void GenerateData();
 
-    typedef itk::PasteImageFilter<ImageType,ImageType> PadFilterType;
+    typedef itk::PasteImageFilter<ImageType,ImageType> PasteFilterType;
+    typedef itk::PasteImageFilter<FloatImageType,FloatImageType> PasteFloatFilterType;
     typename ImageType::Pointer working_image;
     typename ImageType::Pointer object_resampled;
     typename FloatImageType::Pointer relPos;
+    typename FloatImageType::Pointer m_FuzzyMap;
     ImagePointer input;
     ImagePointer object;