X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=itk%2FclitkAddRelativePositionConstraintToLabelImageFilter.txx;h=0e3581ee2eeae844b806e15ecd5a3fabbc620897;hb=8d51bd1cb7e9ca416b46677dcd73ba76d107a587;hp=694910c6490434280661bbbba1d51dfbc96a3bbc;hpb=d8115ca2c9f25daea15a64644e56e005adfb720c;p=clitk.git

diff --git a/itk/clitkAddRelativePositionConstraintToLabelImageFilter.txx b/itk/clitkAddRelativePositionConstraintToLabelImageFilter.txx
index 694910c..0e3581e 100644
--- a/itk/clitkAddRelativePositionConstraintToLabelImageFilter.txx
+++ b/itk/clitkAddRelativePositionConstraintToLabelImageFilter.txx
@@ -22,6 +22,7 @@
 #include "clitkAutoCropFilter.h"
 #include "clitkResampleImageWithOptionsFilter.h"
 #include "clitkBooleanOperatorLabelImageFilter.h"
+#include "clitkCropLikeImageFilter.h"
 
 // itk
 #include <deque>
@@ -32,11 +33,7 @@
 #include <itkBinaryErodeImageFilter.h>
 #include <itkBinaryBallStructuringElement.h>
 #include <itkAddImageFilter.h>
-#if ITK_VERSION_MAJOR >= 4
-  #include <itkDivideImageFilter.h>
-#else
-  #include <itkDivideByConstantImageFilter.h>
-#endif
+#include <itkDivideImageFilter.h>
 
 // itk [Bloch et al] 
 #include "RelativePositionPropImageFilter.h"
@@ -61,6 +58,10 @@ AddRelativePositionConstraintToLabelImageFilter():
   CombineWithOrFlagOff();
   VerboseStepFlagOff();
   WriteStepFlagOff();
+  FuzzyMapOnlyFlagOff();
+  FastFlagOff();
+  SetRadius(2.0);
+  SetK1(std::acos(-1.0)/2);
 }
 //--------------------------------------------------------------------
 
@@ -136,6 +137,8 @@ AddOrientationTypeString(std::string t)
   if (t == "NotSupTo") { AddOrientationType(SupTo); InverseOrientationFlagOn(); return; }
   if (t == "NotInfTo") { AddOrientationType(InfTo); InverseOrientationFlagOn(); return; }
 
+  if (t == "Angle") return;
+
   clitkExceptionMacro("Error, you must provide LeftTo,RightTo or AntTo,PostTo or SupTo,InfTo (or NotLeftTo, NotRightTo etc) but you give " << t);
 }
 //--------------------------------------------------------------------
@@ -175,15 +178,27 @@ GenerateInputRequestedRegion()
 template <class ImageType>
 void 
 clitk::AddRelativePositionConstraintToLabelImageFilter<ImageType>::
-AddAngles(double a, double b) 
+AddAnglesInRad(double a, double b) 
 {
-  AddOrientationTypeString("Angle");
+  m_OrientationTypeString.push_back("Angle");
+  m_OrientationType.push_back(Angle);
   m_Angle1.push_back(a);
   m_Angle2.push_back(b);
 }
 //--------------------------------------------------------------------
 
 
+//--------------------------------------------------------------------
+template <class ImageType>
+void 
+clitk::AddRelativePositionConstraintToLabelImageFilter<ImageType>::
+AddAnglesInDeg(double a, double b) 
+{
+  AddAnglesInRad(clitk::deg2rad(a), clitk::deg2rad(b));
+}
+//--------------------------------------------------------------------
+
+
 //--------------------------------------------------------------------
 template <class ImageType>
 void 
@@ -340,14 +355,14 @@ GenerateData()
   //--------------------------------------------------------------------
   // Step 1 : resample
   if (m_IntermediateSpacingFlag) {
-    StartNewStep("Resample object to intermediate spacing");  
+    StartNewStep("Resample object to intermediate spacing (" + toString(m_IntermediateSpacing) + ")");  
     typedef clitk::ResampleImageWithOptionsFilter<ImageType> ResampleFilterType;
     typename ResampleFilterType::Pointer resampleFilter = ResampleFilterType::New();
     resampleFilter->SetInput(working_image);
     resampleFilter->SetDefaultPixelValue(0);
     resampleFilter->SetOutputIsoSpacing(m_IntermediateSpacing);
     resampleFilter->SetGaussianFilteringEnabled(false);
-    //    resampleFilter->SetVerboseOptions(true);
+    //resampleFilter->SetVerboseOptions(true);
     resampleFilter->Update();
     working_image = resampleFilter->GetOutput();
     StopCurrentStep<ImageType>(working_image);
@@ -361,17 +376,17 @@ GenerateData()
   typedef itk::RelativePositionPropImageFilter<ImageType, FloatImageType> RelPosFilterType;
   typename RelPosFilterType::Pointer relPosFilter;
 
-  typename FloatImageType::Pointer m_FuzzyMap;
   for(int i=0; i<GetNumberOfAngles(); i++) {
     // Compute fuzzy map
     relPosFilter = RelPosFilterType::New();
+    relPosFilter->SetFast(GetFastFlag());
+    relPosFilter->SetRadius(GetRadius());
     relPosFilter->SetInput(working_image);
     relPosFilter->SetAlpha1(m_Angle1[i]); // xy plane
     relPosFilter->SetAlpha2(m_Angle2[i]);
-    relPosFilter->SetK1(M_PI/2.0); // Opening parameter, default = pi/2
-    relPosFilter->SetFast(true);
-    relPosFilter->SetRadius(1); // seems sufficient in this case
+    relPosFilter->SetK1(GetK1());// M_PI/2.0); // Opening parameter, default = pi/2
     // relPosFilter->SetVerboseProgress(true);
+
     relPosFilter->Update();
     relPos = relPosFilter->GetOutput();
 
@@ -395,15 +410,9 @@ GenerateData()
 
   // Divide by the number of relpos
   if (GetNumberOfAngles() != 1) {
-#if ITK_VERSION_MAJOR >= 4
     typedef itk::DivideImageFilter<FloatImageType, FloatImageType, FloatImageType> DivideFilter;
     typename DivideFilter::Pointer divideFilter = DivideFilter::New();
     divideFilter->SetConstant2(GetNumberOfAngles());
-#else
-    typedef itk::DivideByConstantImageFilter<FloatImageType, float, FloatImageType> DivideFilter;
-    typename DivideFilter::Pointer divideFilter = DivideFilter::New();
-    divideFilter->SetConstant(GetNumberOfAngles());
-#endif
     divideFilter->SetInput(m_FuzzyMap);
     divideFilter->Update();
     m_FuzzyMap = divideFilter->GetOutput();
@@ -411,6 +420,44 @@ GenerateData()
 
   relPos = m_FuzzyMap;
   StopCurrentStep<FloatImageType>(relPos);
+  if (GetFuzzyMapOnlyFlag()) {
+    // If the spacing is used, recompute fuzzy map with the input size/spacing
+    if (m_IntermediateSpacingFlag) {
+      StartNewStep("Resample FuzzyMap to come back to the same sampling than input");
+      typedef clitk::ResampleImageWithOptionsFilter<FloatImageType> ResampleFilterType;
+      typename ResampleFilterType::Pointer resampleFilter = ResampleFilterType::New();
+      resampleFilter->SetDefaultPixelValue(0.0); //Default fuzzymap value FIXME
+      resampleFilter->SetInput(relPos);
+      resampleFilter->SetOutputSpacing(input->GetSpacing());
+      resampleFilter->SetGaussianFilteringEnabled(false);
+      resampleFilter->Update();
+      relPos = m_FuzzyMap = resampleFilter->GetOutput();
+      StopCurrentStep<FloatImageType>(relPos);
+
+      // Need to put exactly the same size
+      if (relPos->GetLargestPossibleRegion() != input->GetLargestPossibleRegion()) {
+        StartNewStep("Pad to get the same size than input");
+        typename FloatImageType::Pointer temp = FloatImageType::New();
+        temp->CopyInformation(input);
+        temp->SetRegions(input->GetLargestPossibleRegion()); // Do not forget !!
+        temp->Allocate();
+        temp->FillBuffer(0.0); // Default fuzzymap value FIXME
+        typename PasteFloatFilterType::Pointer padFilter2 = PasteFloatFilterType::New();
+        padFilter2->SetSourceImage(relPos);
+        padFilter2->SetDestinationImage(temp);
+        padFilter2->SetDestinationIndex(input->GetLargestPossibleRegion().GetIndex());
+        padFilter2->SetSourceRegion(relPos->GetLargestPossibleRegion());
+        padFilter2->Update();
+        relPos = padFilter2->GetOutput();
+        StopCurrentStep<FloatImageType>(relPos);
+        m_FuzzyMap = relPos;
+      }     
+    }
+    else {
+      StopCurrentStep<FloatImageType>(relPos);
+    }
+    return;
+  }
                
   //--------------------------------------------------------------------
   //--------------------------------------------------------------------