X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=itk%2FclitkAutoCropFilter.txx;h=6ffb6e537786056ef875be14a9f354d430e4445e;hb=e217697bd9c921fe6dc060dcd9f1af0a2519422e;hp=145cc36f8ae24434cd47d72d1414e398a1c3fd64;hpb=523a9f961d83eaed5ec3365a07b9f6be35b538f0;p=clitk.git

diff --git a/itk/clitkAutoCropFilter.txx b/itk/clitkAutoCropFilter.txx
index 145cc36..6ffb6e5 100644
--- a/itk/clitkAutoCropFilter.txx
+++ b/itk/clitkAutoCropFilter.txx
@@ -21,7 +21,6 @@
 
 // clitk
 #include "clitkCommon.h"
-#include "clitkSegmentationUtils.h"
 
 // itk
 #include "itkAutoCropLabelMapFilter.h"
@@ -39,6 +38,7 @@ namespace clitk {
   AutoCropFilter():itk::ImageToImageFilter<ImageType, ImageType>() {
     this->SetNumberOfRequiredInputs(1);
     m_BackgroundValue  = 0;
+    UseBorderOn();
   }
   //--------------------------------------------------------------------
 
@@ -95,8 +95,14 @@ namespace clitk {
     typedef itk::AutoCropLabelMapFilter<LabelMapType> AutoCropFilterType;
     typename AutoCropFilterType::Pointer autoCropFilter = AutoCropFilterType::New();
     autoCropFilter->SetInput(imageToLabelFilter->GetOutput());
-    autoCropFilter->ReleaseDataFlagOff(); 
-    
+    //    autoCropFilter->ReleaseDataFlagOff(); 
+    if (GetUseBorder()) {
+      typename ImageType::SizeType s;
+      for(uint i=0; i<ImageType::ImageDimension; i++) s[i] = 1;
+      autoCropFilter->SetCropBorder(s);
+    }
+    autoCropFilter->ReleaseDataFlagOn(); 
+
     // Convert to LabelImage
     typedef itk::LabelMapToLabelImageFilter<LabelMapType, ImageType> MapToImageFilterType;
     typename MapToImageFilterType::Pointer labelToImageFilter = MapToImageFilterType::New();       
@@ -114,8 +120,9 @@ namespace clitk {
       typename ImageType::IndexType index; 
       index.Fill(0);
       m_Region.SetIndex(index);
-      DD(m_Region);
     }
+
+    // Set the region to output
     output->SetLargestPossibleRegion(m_Region);
     output->SetRequestedRegion(m_Region);
     output->SetBufferedRegion(m_Region);
@@ -133,17 +140,16 @@ namespace clitk {
   
     // Extract the region with RegionOfInterestImageFilter or ExtractImageFilter ? 
     // The second is when reducing the nb of dimension (index always zero)
-    // The first keep index
+    // The first keep index. 
+    // OLD : typedef itk::ExtractImageFilter<ImageType, ImageType> CropFilterType;
+    // OLD : cropFilter->SetExtractionRegion(m_Region);
 
     typedef itk::RegionOfInterestImageFilter<ImageType, ImageType> CropFilterType;
-    //typedef itk::ExtractImageFilter<ImageType, ImageType> CropFilterType;
     m_labeImage->SetRequestedRegion(m_labeImage->GetLargestPossibleRegion());
     typename CropFilterType::Pointer cropFilter = CropFilterType::New();
     cropFilter->SetInput(m_labeImage);
     cropFilter->SetReleaseDataFlag(this->GetReleaseDataFlag());
-
     cropFilter->SetRegionOfInterest(m_Region);
-    //cropFilter->SetExtractionRegion(m_Region);
 
     // Go ! 
     cropFilter->Update();