X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=itk%2FclitkResampleImageWithOptionsFilter.txx;h=7e5eeab4eb78e9d4745d4b9a92fd8f2e34d6430b;hb=8a1ec8f0cfd3c6b4cd29ea5456cbdf598f7f0b06;hp=8e709d8c29dc9f10818d5daffdfffc82dfceeddd;hpb=24c5609b3554d6a120dd150540de929192d8c084;p=clitk.git

diff --git a/itk/clitkResampleImageWithOptionsFilter.txx b/itk/clitkResampleImageWithOptionsFilter.txx
index 8e709d8..7e5eeab 100644
--- a/itk/clitkResampleImageWithOptionsFilter.txx
+++ b/itk/clitkResampleImageWithOptionsFilter.txx
@@ -3,7 +3,7 @@
 
   Authors belong to:
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,10 +14,10 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 // clitk
-#include "clitkCommon.h"
+#include "clitkDD.h"
 
 // itk include
 #include "itkImage.h"
@@ -55,6 +55,7 @@ ResampleImageWithOptionsFilter():itk::ImageToImageFilter<InputImageType, OutputI
     m_GaussianSigma[i] = -1;
   }
   m_VerboseOptions = false;
+  SetDefaultPixelValue(0);
 }
 //--------------------------------------------------------------------
 
@@ -121,12 +122,16 @@ GenerateOutputInformation()
   if (m_OutputIsoSpacing != -1) { // apply isoSpacing
     for(unsigned int i=0; i<dim; i++) {
       m_OutputSpacing[i] = m_OutputIsoSpacing;
-      m_OutputSize[i] = (int)lrint(inputSize[i]*inputSpacing[i]/m_OutputSpacing[i]);
+      // floor() is used to intentionally reduce the number of slices 
+      // because, from a clinical point of view, it's better to 
+      // remove data than to add data that privously didn't exist.
+      m_OutputSize[i] = (int)floor(inputSize[i]*inputSpacing[i]/m_OutputSpacing[i]);
     }
   } else {
     if (m_OutputSpacing[0] != -1) { // apply spacing, compute size
       for(unsigned int i=0; i<dim; i++) {
-        m_OutputSize[i] = (int)lrint(inputSize[i]*inputSpacing[i]/m_OutputSpacing[i]);
+	// see comment above for the use of floor()
+	m_OutputSize[i] = (int)floor(inputSize[i]*inputSpacing[i]/m_OutputSpacing[i]);
       }
     } else {
       if (m_OutputSize[0] != 0) { // apply size, compute spacing
@@ -188,19 +193,11 @@ GenerateData()
   InputImagePointer input = dynamic_cast<InputImageType*>(itk::ProcessObject::GetInput(0));
   static const unsigned int dim = InputImageType::ImageDimension;
 
-  // Set regions and allocate
-  //DD(this->GetOutput()->GetLargestPossibleRegion());
-  //this->GetOutput()->SetRegions(m_OutputRegion);
-  //this->GetOutput()->Allocate();
-  // this->GetOutput()->FillBuffer(m_DefaultPixelValue);
-
   // Create main Resample Image Filter
   typedef itk::ResampleImageFilter<InputImageType,OutputImageType> FilterType;
   typename FilterType::Pointer filter = FilterType::New();
   filter->GraftOutput(this->GetOutput());
-  //     this->GetOutput()->Print(std::cout);
   this->GetOutput()->SetBufferedRegion(this->GetOutput()->GetLargestPossibleRegion());
-  //     this->GetOutput()->Print(std::cout);
 
   // Print options if needed
   if (m_VerboseOptions) {