X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=lib%2FInterface_ManagerContour_NDimensions%2FwxContourMainFrame.cxx;h=89f6c39f741d38bc0ee2f9cefcff02aec367c6c9;hb=8f2bd3952065a2028ae345188c3493f82eda2b27;hp=e81e73084b2cd0225ef3ecb515e20eb8240cd06d;hpb=771693e697633fa631dbaa4823404eb2890136e5;p=creaContours.git diff --git a/lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx b/lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx index e81e730..89f6c39 100644 --- a/lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx +++ b/lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx @@ -13,12 +13,6 @@ #include "NameWrapper.h" #include "wx/artprov.h" #include "ConceptDataWrap.h" - -#include -//#include "ImageSourceThing.h" -//#include "wxContour_ActionCommandsID.h" -//#include "OutlineModelBuilder.h" -//#include "wxContourEventHandler.h" #include //---------------------------------------------------------------------------------------------------------------- @@ -58,6 +52,11 @@ char wxContourMainFrame::COPY = 'C'; _refLineControl = NULL; _refLineModel = NULL; _refLineView = NULL; + _imageReslicer = NULL; + _thresholdTable = NULL; + _thresholdMapper = NULL; + _thresholdActor = NULL; + _actorPresent = false; // set up default notebook style // m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER; @@ -72,69 +71,65 @@ char wxContourMainFrame::COPY = 'C'; m_mgr.SetManagedWindow(this); _creatingContoursActive = false; _theViewPanel = NULL; -// _modelManager = NULL; - _instantPanel = NULL; -// _buttonsBar = NULL; -// _gridPanel = NULL; -// _drawToolsPanel = NULL; -// _operationsToolsPanel = NULL; -// _autoFormsPanel = NULL; -// _standardToolsPanel = NULL; -// _editionToolsPanel = NULL; -// _listViewPanel = NULL; -// _sceneManager = NULL; -// _actualInstant = NULL; + _instantPanel = NULL; _refLineControl = NULL; _refLineModel = NULL; _refLineView = NULL; + _imageReslicer = NULL; + _thresholdTable = NULL; + _thresholdMapper = NULL; + _thresholdActor = NULL; + _actorPresent = false; // set up default notebook style m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER; m_notebook_theme = 0; //wxContour_ActionCommandsID a; - _numberOfVariablesStatistics = 6+1; + _numberOfVariablesStatistics = 7; + _datadir = datadir; - _performingOperation = new PerformingOperation(); -//JCP 17 - 10 - 2008 + + inredo = 0; + inundo = 0; - inredo = 0; - inundo = 0; + _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler); + _performingOperation = new PerformingOperation(); - kernelManager = new KernelManagerContour(images,datadir+"/data/"); - //kernelManager->setVectImages(images); - //kernelManager->initializeEnvironment(); - - //vtkImageData* selectedimage = kernelManager->getVectImages()[0]; - -//------------------------------------------------------------- + if(images.size() > 0) + { + this->setVectImages(images); + } - /*frame = new wxContourMainFrame(_builder->getImSourceEnv(), _builder->getImSectionEnv(), _builder->getAxesEnv(), _builder->getContourEnv(),NULL, wxID_ANY, wxT("ROI Application Sample"), wxPoint(50,50), wxSize(800, 600)); - frame->Show(TRUE);*/ +} - //Creating the evtHandler of the panels - //wxContourEventHandler * eventHandler = new wxContourEventHandler(); +void wxContourMainFrame::setVectImages(std::vector imgs) +{ - //Creating the window that will show the panels + _images = imgs; - //Getting the parent for the panels ( using aui ) - wxAuiNotebook * notebook = this->createNotebook(); + #if defined(__GNUC__) + std::string str_home(getenv("HOME")); + #elif defined(_WIN32) + std::string str_home(getenv("USERPROFILE")); + #endif + std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/"; - //JCP 17 - 11 - 08 - //wxInstantChooserPanel * instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true); - //JCP 17 - 11 - 08 std::vector conceptNameVect; std::vector conceptSizeVect; - + notebook = this->createNotebook(); - _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" ); - _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook ); + kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp ); - kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect); + _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" ); + _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook ); + +//------------------------------------------------------------- + kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect); _instantPanel->addConcepts(conceptNameVect, conceptSizeVect); @@ -145,22 +140,9 @@ char wxContourMainFrame::COPY = 'C'; //*******************changeInstant(); _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(), data->getMaxShowedValue(), data->getActualValue() ); - //eventHandler->setModelManager( kernelManager->getOutlineModelManager() ); - //eventHandler->setViewPanel( _theViewPanel ); - //_theViewPanel->initializeScenceManager(); - //eventHandler->setInstantChooserPanel( _instantPanel ); - - //bool successConfiuration = eventHandler->configureEventsHandling(); - - //successConfiuration &= this->configurePanels( notebook ); - this->configurePanels( notebook ); - - interfMainPanel* pannew = interfMainPanel::getInstance(parent,datadir+"/data/Icons");//, eventHandler); + this->configurePanels( ); -//JCP 17 -10 - 2008 - - - } +} wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector images, long style,std::string datadir ){ @@ -170,25 +152,42 @@ char wxContourMainFrame::COPY = 'C'; return instance; } - std::vector wxContourMainFrame ::getVectImages(){ + std::vector wxContourMainFrame ::getVectImages() + { return kernelManager->getVectImages(); } - wxContourMainFrame* wxContourMainFrame :: getInstance(){ - return instance; - + + wxContourMainFrame* wxContourMainFrame :: getInstance() + { + return instance; + } + + void wxContourMainFrame :: resetInstance() + { + instance->Destroy(); } wxContourMainFrame :: ~wxContourMainFrame() { - m_mgr.UnInit(); - //El problema al cerrar la aplicacion puede estar asociado - //a que wxAUINotebook esta en la aplicacion - //principal (wxContourGUIExample)tambien -//EED???? delete _theViewPanel; -//EED???? delete _instantPanel; -//EED???? delete _buttonsBar; -//EED???? delete _actualInstant; -//EED???? delete _sceneManager; + deleteAllContours(); + _pannew->Close(); + interfMainPanel::resetInstance(); + delete kernelManager; + instance = NULL; + //_pannew->Destroy(); + //delete _pannew; + + m_mgr.UnInit(); + //delete m_mgr; + + //El problema al cerrar la aplicacion puede estar asociado + //a que wxAUINotebook esta en la aplicacion + //principal (wxContourGUIExample)tambien + //EED???? delete _theViewPanel; + //EED???? delete _instantPanel; + //EED???? delete _buttonsBar; + //EED???? delete _actualInstant; + //EED???? delete _sceneManager; } @@ -208,45 +207,44 @@ char wxContourMainFrame::COPY = 'C'; //------------------------------------------------------------------------------------------------------------ // Creational and initialization methods //------------------------------------------------------------------------------------------------------------ - bool wxContourMainFrame :: configurePanels(wxAuiNotebook* theNoteBook) + bool wxContourMainFrame :: configurePanels( ) { bool configured = _theViewPanel!=NULL; configured &= _theViewPanel!=NULL; if( _theViewPanel!=NULL ) { - theNoteBook->AddPage( _theViewPanel, wxT(" View ") ); + notebook->AddPage( _theViewPanel, wxT(" View ") ); m_mgr.Update(); } if( configured ) { - theNoteBook->AddPage( _instantPanel, wxT("Instant Page") ); + notebook->AddPage( _instantPanel, wxT("Instant Page") ); m_mgr.Update(); } - m_mgr.AddPane(theNoteBook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false)); + m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false)); m_mgr.Update(); -/* configured &= _buttonsBar!=NULL; - if( _buttonsBar!=NULL ) - { - m_mgr.AddPane(_buttonsBar, wxAuiPaneInfo(). - Name(wxT("TB")).Caption(wxT("Buttons Bar")). - ToolbarPane().Top(). - LeftDockable( ).RightDockable( false ).CloseButton(false)); - m_mgr.Update(); - }*/ - //CreateStatusBar(); - + SetMinSize(wxSize(300,300)); m_mgr.Update(); return configured; } - void wxContourMainFrame :: setNotebook( wxAuiNotebook * noteBook ) - { + bool wxContourMainFrame::addNewPanel(wxPanel* panel) + { + bool configured = panel!=NULL; + configured &= panel!=NULL; + + if( configured ) + { + notebook->AddPage( panel, wxT(" Viewer "), true ); + m_mgr.Update(); + } + return configured; } //------------------------------------------------------------------------------------------------------------ @@ -587,7 +585,8 @@ bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){ return _instantPanel->getIfConceptCheckedAt( name, pos ); } -void wxContourMainFrame::changeInstant(){ +void wxContourMainFrame::changeInstant() +{ std::vector instantVect; _instantPanel->getInstant( instantVect ); // Instant * theInstant = new Instant ( &instantVect ); @@ -598,14 +597,15 @@ void wxContourMainFrame::changeInstant(){ kernelManager->setInstant(instantVect); //_modelManager->setInstant( _actualInstant ); + onThresholdChange(); updateInstantOutlines(); updateInstantImageData(); updateInstantAxes(); - - } -void wxContourMainFrame :: updateInstantOutlines(){ - + + +void wxContourMainFrame :: updateInstantOutlines() +{ _theViewPanel->removeSceneContours(); _theViewPanel->addNameWrapperToScene(); @@ -622,7 +622,8 @@ std::string wxContourMainFrame::getNameWrapping(int i){ return kernelManager->getNameWrapping(i); } -void wxContourMainFrame::updateInstantImageData(){ +void wxContourMainFrame::updateInstantImageData() +{ std::vector inst; _instantPanel->getInstant(inst); @@ -635,9 +636,12 @@ void wxContourMainFrame::updateInstantImageData(){ _theViewPanel->setImageSlice(z); } } -void wxContourMainFrame::updateInstantAxes(){ + +void wxContourMainFrame::updateInstantAxes() +{ } + void wxContourMainFrame::onChangeDeep(int val){ _instantPanel->setConceptValue( "Axe Depth", (int)val ); changeInstant(); @@ -709,10 +713,10 @@ void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, double pnt1X = refPoint1->GetX(); double pnt1Y = refPoint1->GetY(); - double pnt1Z = refPoint1->GetZ(); +// double pnt1Z = refPoint1->GetZ(); double pnt2X = refPoint2->GetX(); double pnt2Y = refPoint2->GetY(); - double pnt2Z = refPoint2->GetZ(); +// double pnt2Z = refPoint2->GetZ(); double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90; vtkTransform *t = vtkTransform::New(); @@ -751,24 +755,94 @@ void wxContourMainFrame ::loadState(std::string filename){ fscanf(pFile,"%s",tmp); // --CreaContour-- fscanf(pFile,"%s",tmp); // Version - fscanf(pFile,"%s",tmp); // 1.0.1 - std::string version(tmp); + fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0 deleteAllContours(); - openContours(pFile,false); - if (version!="1.0.0"){ - openContours(pFile,true); - } + loadContours(pFile, false); + loadContours(pFile, true); fclose(pFile); +} + +void wxContourMainFrame ::loadContours( FILE *pFile, bool staticContour ) +{ + char tmp[255]; + + if (staticContour==false) + { + fscanf(pFile,"%s",tmp); // ImageDimensions + fscanf(pFile,"%s",tmp); // X + fscanf(pFile,"%s",tmp); // Y + fscanf(pFile,"%s",tmp); // Z + + fscanf(pFile,"%s",tmp); // ImageSpacing + fscanf(pFile,"%s",tmp); // X + fscanf(pFile,"%s",tmp); // Y + fscanf(pFile,"%s",tmp); // Z + } - //_theViewPanel->getSceneManager()->removeSceneContours(); - //changeInstant(); + fscanf(pFile,"%s",tmp); // NumberOfContours + fscanf(pFile,"%s",tmp); // ## + int numberOfContours = atoi(tmp); + + std::vector instantVector; + int typeContourModel; + manualContourModel *manModelContour; + int typeView; + + int i; + for (i=0;ifactoryManualContourModel(typeContourModel); + manModelContour->Open(pFile); + fscanf(pFile,"%s",tmp); // TypeView + fscanf(pFile,"%s",tmp); // ## + typeView = atoi(tmp); + + std::string theName; + theName = kernelManager->createOutline( manModelContour, instantVector ); + bool addedModel = theName.compare("") != 0; + if( addedModel ) + { + double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default + _theViewPanel->getSpacing(spc); + //Adding the manualContourControler to interface objects structure + //Adding the manualViewContour to interface objects structure + //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active. + _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ; + } + + if (staticContour==true) + { + Instant instant(&instantVector); + kernelManager->changeContourOfManager( theName , &instant ); + } + }// for numberOfContours } -void wxContourMainFrame::onLoad(){ +void wxContourMainFrame::onLoad() +{ char tmp[255]; wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN ); if (dialog.ShowModal() == wxID_OK) @@ -779,20 +853,36 @@ void wxContourMainFrame::onLoad(){ fscanf(pFile,"%s",tmp); // --CreaContour-- fscanf(pFile,"%s",tmp); // Version - fscanf(pFile,"%s",tmp); // 1.0.1 + fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0 std::string version(tmp); - - openContours(pFile,false); - if (version!="1.0.0"){ - openContours(pFile,true); + + //AD:02-06-09 + if (version=="1.0.2") + { + openContours(pFile,2,false); + openContours(pFile,2,true); //Load StaticContours + } + + //AD:02-06-09 + else if (version=="1.0.1") + { + openContours(pFile,1,false); //Skips ImageDimensions and ImageSpacing + openContours(pFile,1,true); //Load StaticContours, skips ImageDimensions and ImageSpacing + } + + //AD:02-06-09 + else if (version=="1.0.0") + { + openContours(pFile,1,false); //Skips ImageDimensions and ImageSpacing } -// _theViewPanel->getSceneManager()->openFileWithContours(ff); fclose(pFile); } _theViewPanel->getSceneManager()->removeSceneContours(); changeInstant(); } + +//AD: 29-05-09 void wxContourMainFrame::onSave(){ wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE ); if (dialog.ShowModal() == wxID_OK) @@ -802,26 +892,48 @@ void wxContourMainFrame::onSave(){ saveFileWithContours( fileNameContourROI ); } } -void wxContourMainFrame::saveFileWithContours( std::string filename ){ + +//AD: 29-05-09 +void wxContourMainFrame::saveFileWithContours( std::string filename ) +{ FILE *pFile=fopen(filename.c_str(),"w+"); std::vector< std::string > lstNameThings; int i,sizeLstNameThings; fprintf(pFile,"--CreaContour--\n"); - fprintf(pFile,"Version %s\n", "1.0.1" ); + fprintf(pFile,"Version %s\n", "1.0.2" ); + + vtkImageData *image = _images[0]; + + int dimRange[3]; + image->GetDimensions(dimRange); + + fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] ); + + double spaRange[3]; + image->GetSpacing(spaRange); + + fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] ); // Normal Contours + lstNameThings = kernelManager->GetLstNameThings(); sizeLstNameThings = lstNameThings.size(); fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings ); + for (i=0 ; iSaveThingName( pFile, lstNameThings[i] ); _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] ); }// for i - //-- Contours Statics + //-- Static Contours + + fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] ); + + fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] ); + lstNameThings = kernelManager->GetLstNameThingsStatic(); sizeLstNameThings = lstNameThings.size(); fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings ); @@ -833,8 +945,48 @@ void wxContourMainFrame::saveFileWithContours( std::string filename ){ fclose(pFile); } -void wxContourMainFrame::openContours( FILE *pFile, bool staticContour ){ +//AD:04-06-09 +void wxContourMainFrame::openContours( FILE *pFile, int version, bool staticContour ) +{ char tmp[255]; + + vtkImageData *image = _images[0]; + int imageDim[3]; + double imageSpac[3]; + int tempDim[3]; + double tempSpac[3]; + + bool compatible = true; + + //Version==2 + if (version==2) + { + image->GetDimensions(imageDim); + image->GetSpacing(imageSpac); + + fscanf(pFile,"%s",tmp); // ImageDimensions + fscanf(pFile,"%s",tmp); // X + tempDim[0] = atoi(tmp); + fscanf(pFile,"%s",tmp); // Y + tempDim[1] = atoi(tmp); + fscanf(pFile,"%s",tmp); // Z + tempDim[2] = atoi(tmp); + + fscanf(pFile,"%s",tmp); // ImageSpacing + fscanf(pFile,"%s",tmp); // X + tempSpac[0] = atof(tmp); + fscanf(pFile,"%s",tmp); // Y + tempSpac[1] = atof(tmp); + fscanf(pFile,"%s",tmp); // Z + tempSpac[2] = atof(tmp); + + //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2 + if (imageDim[0]!=tempDim[0] || imageDim[1]!=tempDim[1] || imageSpac[0]!=tempSpac[0] || imageSpac[1]!=tempSpac[1]) + { + compatible = false; + } + } + fscanf(pFile,"%s",tmp); // NumberOfContours fscanf(pFile,"%s",tmp); // ## int numberOfContours = atoi(tmp); @@ -844,64 +996,159 @@ void wxContourMainFrame::openContours( FILE *pFile, bool staticContour ){ manualContourModel *manModelContour; int typeView; - int i; - for (i=0;ifactoryManualContourModel(typeContourModel); - manModelContour->Open(pFile); - - fscanf(pFile,"%s",tmp); // TypeView - fscanf(pFile,"%s",tmp); // ## - typeView = atoi(tmp); - - -// if (typeView==1) -// { -// } + int i; + for (i=0;ifactoryManualContourModel(typeContourModel); + manModelContour->Open(pFile); + + fscanf(pFile,"%s",tmp); // TypeView + fscanf(pFile,"%s",tmp); // ## + typeView = atoi(tmp); + + std::string theName; + theName = kernelManager->createOutline( manModelContour, instantVector ); + bool addedModel = theName.compare("") != 0; + if( addedModel ) + { + double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default + _theViewPanel->getSpacing(spc); + //Adding the manualContourControler to interface objects structure + //Adding the manualViewContour to interface objects structure + //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active. + _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ; + } + + if (staticContour) //StaticContours (will appear in all slices) + { + Instant instant(&instantVector); + kernelManager->changeContourOfManager( theName , &instant ); + } + }// for numberOfContours + } - std::string theName; - theName = kernelManager->createOutline( manModelContour, instantVector ); - bool addedModel = theName.compare("") != 0; - if( addedModel ) - { - double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default - _theViewPanel->getSpacing(spc); - //Adding the manualContourControler to interface objects structure - //Adding the manualViewContour to interface objects structure - //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active. - _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ; - } + else if (compatible==false) + { + wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(260,160)); + wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL); + wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL); + + wxString lstOptOperation[2]; + lstOptOperation[0]=_T("By Dimension"); + lstOptOperation[1]=_T("By Spacing"); + wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,45), 2 , lstOptOperation, 2, wxRA_SPECIFY_COLS); + + dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the ")) , 0, wxGROW ); + dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?")) , 0, wxGROW ); + dialSizer->Add( new wxStaticText(dial,-1,_T(" ")) , 0, wxGROW ); + dialSizer->Add(radioOpts,0,wxGROW); + dialSizer->Add( new wxStaticText(dial,-1,_T(" ")) , 0, wxGROW ); + dialSizer->Add(buttonsSizer,0,wxGROW); + dial->SetSizer(dialSizer, true); + dial->Layout(); + dial->ShowModal(); + + int typeOfTransformation = -1; + bool transform = false; - if (staticContour==true) + if (dial->GetReturnCode() == wxID_OK) { - Instant instant(&instantVector); - kernelManager->changeContourOfManager( theName , &instant ); + typeOfTransformation = radioOpts->GetSelection(); + transform = true; } + + int i; + for (i=0;ifactoryManualContourModel(typeContourModel); + manModelContour->Open(pFile); + + if (transform==true) + { + if (typeOfTransformation==0) + { + double transX, transY; + transX = (double) imageDim[0]/tempDim[0]; + transY = (double) imageDim[1]/tempDim[1]; + manModelContour->Transform_Ax_Plus_B(transX,0,transY,0); + } + else if (typeOfTransformation==1) + { + double transX, transY; + transX = (double) tempSpac[0]/imageSpac[0]; + transY = (double) tempSpac[1]/imageSpac[1]; + manModelContour->Transform_Ax_Plus_B(transX,0,transY,0); + } + } - }// for numberOfContours + fscanf(pFile,"%s",tmp); // TypeView + fscanf(pFile,"%s",tmp); // ## + typeView = atoi(tmp); + std::string theName; + theName = kernelManager->createOutline( manModelContour, instantVector ); + bool addedModel = theName.compare("") != 0; + if( addedModel ) + { + double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default + _theViewPanel->getSpacing(spc); + //Adding the manualContourControler to interface objects structure + //Adding the manualViewContour to interface objects structure + //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active. + _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ; + } + + if (staticContour) //StaticContours (will appear in all slices) + { + Instant instant(&instantVector); + kernelManager->changeContourOfManager( theName , &instant ); + } + }// for numberOfContours + } } void wxContourMainFrame::RefreshInterface(){ @@ -931,177 +1178,176 @@ void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString s void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation) { - int typeofcontour = 1; //Image Data vtkImageData *imagedata = getImageData(); //Tipo de pixeles a utilizar internamente en ITK - typedef float InternalPixelType; - const unsigned int Dimension = 2; - typedef itk::Image< InternalPixelType, Dimension > InternalImageType; + typedef float InternalPixelType; + const unsigned int Dimension = 2; + typedef itk::Image< InternalPixelType, Dimension > InternalImageType; - //Tipo de pixeles de salida 1 - typedef unsigned char OutputPixelType; - typedef itk::Image< OutputPixelType, Dimension > OutputImageType; + //Tipo de pixeles de salida 1 + typedef unsigned char OutputPixelType; + typedef itk::Image< OutputPixelType, Dimension > OutputImageType; - //Tipo de pixeles de salida 2 - typedef unsigned short OutputPixelType2; - typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2; + //Tipo de pixeles de salida 2 + typedef unsigned short OutputPixelType2; + typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2; - //Definición del thresholder - typedef itk::BinaryThresholdImageFilter< - InternalImageType, - OutputImageType > ThresholdingFilterType; - - //Definición del primer filtro de conversión de pixeles - typedef itk::CastImageFilter< - OutputImageType, OutputImageType2 > CastFilterType; + //DefiniciÛn del thresholder + typedef itk::BinaryThresholdImageFilter< + InternalImageType, + OutputImageType > ThresholdingFilterType; + + //DefiniciÛn del primer filtro de conversiÛn de pixeles + typedef itk::CastImageFilter< + OutputImageType, OutputImageType2 > CastFilterType; - //Definición del segundo tipo de conversión de pixeles - typedef itk::CastImageFilter< - OutputImageType2, InternalImageType > CastFilterType2; + //DefiniciÛn del segundo tipo de conversiÛn de pixeles + typedef itk::CastImageFilter< + OutputImageType2, InternalImageType > CastFilterType2; - //Tercer tipo de conversión - typedef itk::RescaleIntensityImageFilter< - InternalImageType, - OutputImageType > CastFilterType3; + //Tercer tipo de conversiÛn + typedef itk::RescaleIntensityImageFilter< + InternalImageType, + OutputImageType > CastFilterType3; - //Cuarto tipo de conversión - typedef itk::RescaleIntensityImageFilter< - OutputImageType, - OutputImageType > CastFilterType4; + //Cuarto tipo de conversiÛn + typedef itk::RescaleIntensityImageFilter< + OutputImageType, + OutputImageType > CastFilterType4; - ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New(); - - thresholder->SetLowerThreshold( 0.0 ); - thresholder->SetUpperThreshold( 128 ); + ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New(); + + thresholder->SetLowerThreshold( 0.0 ); + thresholder->SetUpperThreshold( 128 ); - thresholder->SetOutsideValue( 255 ); - thresholder->SetInsideValue( 0 ); + thresholder->SetOutsideValue( 255 ); + thresholder->SetInsideValue( 0 ); - //Definción de conexiónes entre VTK e ITK y el writer - typedef itk::VTKImageToImageFilter ConnectorType; - typedef itk::ImageToVTKImageFilter ConnectorType2; - typedef itk::ImageFileWriter< OutputImageType > WriterType; + //DefinciÛn de conexiÛnes entre VTK e ITK y el writer + typedef itk::VTKImageToImageFilter ConnectorType; + typedef itk::ImageToVTKImageFilter ConnectorType2; + typedef itk::ImageFileWriter< OutputImageType > WriterType; - ConnectorType::Pointer connector= ConnectorType::New(); - ConnectorType2::Pointer connector2= ConnectorType2::New(); - + ConnectorType::Pointer connector= ConnectorType::New(); + ConnectorType2::Pointer connector2= ConnectorType2::New(); + - CastFilterType::Pointer filter=CastFilterType::New(); - CastFilterType2::Pointer filter2=CastFilterType2::New(); + CastFilterType::Pointer filter=CastFilterType::New(); + CastFilterType2::Pointer filter2=CastFilterType2::New(); - connector->SetInput( imagedata ); - filter2->SetInput(connector->GetOutput()); + connector->SetInput( imagedata ); + filter2->SetInput(connector->GetOutput()); - typedef itk::CurvatureAnisotropicDiffusionImageFilter< - InternalImageType, - InternalImageType > SmoothingFilterType; + typedef itk::CurvatureAnisotropicDiffusionImageFilter< + InternalImageType, + InternalImageType > SmoothingFilterType; - SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New(); + SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New(); - typedef itk::GradientMagnitudeRecursiveGaussianImageFilter< - InternalImageType, - InternalImageType > GradientFilterType; + typedef itk::GradientMagnitudeRecursiveGaussianImageFilter< + InternalImageType, + InternalImageType > GradientFilterType; - typedef itk::SigmoidImageFilter< - InternalImageType, - InternalImageType > SigmoidFilterType; + typedef itk::SigmoidImageFilter< + InternalImageType, + InternalImageType > SigmoidFilterType; - GradientFilterType::Pointer gradientMagnitude = GradientFilterType::New(); + GradientFilterType::Pointer gradientMagnitude = GradientFilterType::New(); - SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New(); + SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New(); - sigmoid->SetOutputMinimum( 0.0 ); - sigmoid->SetOutputMaximum( 255.0 ); + sigmoid->SetOutputMinimum( 0.0 ); + sigmoid->SetOutputMaximum( 255.0 ); - typedef itk::FastMarchingImageFilter< - InternalImageType, - InternalImageType > FastMarchingFilterType; + typedef itk::FastMarchingImageFilter< + InternalImageType, + InternalImageType > FastMarchingFilterType; - FastMarchingFilterType::Pointer fastMarching = FastMarchingFilterType::New(); + FastMarchingFilterType::Pointer fastMarching = FastMarchingFilterType::New(); - typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType, - InternalImageType > GeodesicActiveContourFilterType; - GeodesicActiveContourFilterType::Pointer geodesicActiveContour = - GeodesicActiveContourFilterType::New(); + typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType, + InternalImageType > GeodesicActiveContourFilterType; + GeodesicActiveContourFilterType::Pointer geodesicActiveContour = + GeodesicActiveContourFilterType::New(); - typedef itk::ZeroCrossingImageFilter< - InternalImageType, - InternalImageType > ZeroCrossingFilterType; -ZeroCrossingFilterType::Pointer zeroCrossing = - ZeroCrossingFilterType::New(); + typedef itk::ZeroCrossingImageFilter< + InternalImageType, + InternalImageType > ZeroCrossingFilterType; + ZeroCrossingFilterType::Pointer zeroCrossing = + ZeroCrossingFilterType::New(); -const double propagationScaling = atof( prop ); + const double propagationScaling = atof( crea::wx2std(prop).c_str() ); - geodesicActiveContour->SetPropagationScaling( propagationScaling ); - geodesicActiveContour->SetCurvatureScaling( 1.0 ); - geodesicActiveContour->SetAdvectionScaling( 1.0 ); + geodesicActiveContour->SetPropagationScaling( propagationScaling ); + geodesicActiveContour->SetCurvatureScaling( 1.0 ); + geodesicActiveContour->SetAdvectionScaling( 1.0 ); - geodesicActiveContour->SetMaximumRMSError( 0.02 ); - int it=atoi( iter ); - geodesicActiveContour->SetNumberOfIterations( it ); + geodesicActiveContour->SetMaximumRMSError( 0.02 ); + int it=atoi( crea::wx2std(iter).c_str() ); + geodesicActiveContour->SetNumberOfIterations( it ); - smoothing->SetInput( filter2->GetOutput() ); - gradientMagnitude->SetInput( smoothing->GetOutput() ); - sigmoid->SetInput( gradientMagnitude->GetOutput() ); - fastMarching->SetInput( sigmoid->GetOutput() ); - geodesicActiveContour->SetInput( fastMarching->GetOutput() ); - geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() ); - - zeroCrossing->SetInput( geodesicActiveContour->GetOutput() ); - //thresholder->SetInput( zeroCrossing->GetOutput() ); - thresholder->SetInput( geodesicActiveContour->GetOutput() ); - connector2->SetInput( thresholder->GetOutput() ); - + smoothing->SetInput( filter2->GetOutput() ); + gradientMagnitude->SetInput( smoothing->GetOutput() ); + sigmoid->SetInput( gradientMagnitude->GetOutput() ); + fastMarching->SetInput( sigmoid->GetOutput() ); + geodesicActiveContour->SetInput( fastMarching->GetOutput() ); + geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() ); + + zeroCrossing->SetInput( geodesicActiveContour->GetOutput() ); + //thresholder->SetInput( zeroCrossing->GetOutput() ); + thresholder->SetInput( geodesicActiveContour->GetOutput() ); + connector2->SetInput( thresholder->GetOutput() ); + - smoothing->SetTimeStep( 0.125 ); - smoothing->SetNumberOfIterations( 5 ); - smoothing->SetConductanceParameter( 9.0 ); + smoothing->SetTimeStep( 0.125 ); + smoothing->SetNumberOfIterations( 5 ); + smoothing->SetConductanceParameter( 9.0 ); - const double sigma = atof( sigm ); - gradientMagnitude->SetSigma( sigma ); + const double sigma = atof( crea::wx2std(sigm).c_str() ); + gradientMagnitude->SetSigma( sigma ); - const double alpha = atof( alf ); - const double beta = atof( bet ); + const double alpha = atof( crea::wx2std(alf).c_str() ); + const double beta = atof( crea::wx2std(bet).c_str() ); - sigmoid->SetAlpha( alpha ); - sigmoid->SetBeta( beta ); - - typedef FastMarchingFilterType::NodeContainer NodeContainer; - typedef FastMarchingFilterType::NodeType NodeType; + sigmoid->SetAlpha( alpha ); + sigmoid->SetBeta( beta ); + + typedef FastMarchingFilterType::NodeContainer NodeContainer; + typedef FastMarchingFilterType::NodeType NodeType; - NodeContainer::Pointer seeds = NodeContainer::New(); + NodeContainer::Pointer seeds = NodeContainer::New(); - InternalImageType::IndexType seedPosition; - seedPosition[0] = x; - seedPosition[1] = y; + InternalImageType::IndexType seedPosition; + seedPosition[0] = x; + seedPosition[1] = y; - const double initialDistance = atof( distanc ); + const double initialDistance = atof( crea::wx2std(distanc).c_str() ); - NodeType node; + NodeType node; - const double seedValue = - initialDistance; + const double seedValue = - initialDistance; - node.SetValue( seedValue ); - node.SetIndex( seedPosition ); - - seeds->Initialize(); - seeds->InsertElement( 0, node ); - - fastMarching->SetTrialPoints( seeds ); - - fastMarching->SetSpeedConstant( 1.0 ); - - fastMarching->SetOutputSize( - connector->GetOutput()->GetBufferedRegion().GetSize() ); - - fastMarching->SetStoppingValue( 800 ); - try + node.SetValue( seedValue ); + node.SetIndex( seedPosition ); + + seeds->Initialize(); + seeds->InsertElement( 0, node ); + + fastMarching->SetTrialPoints( seeds ); + + fastMarching->SetSpeedConstant( 1.0 ); + + fastMarching->SetOutputSize( + connector->GetOutput()->GetBufferedRegion().GetSize() ); + + fastMarching->SetStoppingValue( 800 ); + try { connector2->Update(); @@ -1134,26 +1380,26 @@ const double propagationScaling = atof( prop ); vtkPolyData* polyDataResult = cntVTK->GetOutput(); - std::cout<<"Points "<GetNumberOfPoints()<GetNumberOfPoints()<Update( ); polyDataResult->UpdateInformation(); -//EED - /* -ofstream myfile; -myfile.open ("C:/Creatis/example.txt"); -myfile << "\n"; -polyDataResult->Print(myfile); -myfile << "-------------------------------------\n"; -polyDataResult->GetLines()->Print(myfile); -myfile.close();*/ + //EED + /* + ofstream myfile; + myfile.open ("C:/Creatis/example.txt"); + myfile << "\n"; + polyDataResult->Print(myfile); + myfile << "-------------------------------------\n"; + polyDataResult->GetLines()->Print(myfile); + myfile.close();*/ cntVTK -> Delete(); cpd -> Delete(); conn -> Delete(); -//--Calculating control points + //--Calculating control points std::vector vecX; std::vector vecY; @@ -1172,8 +1418,8 @@ myfile.close();*/ double xAct=0; double yAct=0; int ii,size=polyDataResult->GetNumberOfPoints(); -ofstream myfile; -myfile.open ("C:/Creatis/example2.txt"); + ofstream myfile; + myfile.open ("C:/Creatis/example2.txt"); size=polyDataResult->GetNumberOfPoints(); for (ii=0;iiSetContour( &vecX , &vecY , &vecZ ); -int method=2; + int method=2; if (method==0){ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ ); } @@ -1483,11 +1729,11 @@ myfile.close(); { id = polyDataResult->GetLines()->GetData()->GetValue(ii); p = polyDataResult->GetPoint(id); - double x=p[0]; - double y=p[1]; +// double x=p[0]; +// double y=p[1]; vecX.push_back( p[0] ); vecY.push_back( p[1] ); - vecZ.push_back( -900 ); + vecZ.push_back( 900 ); // vecZ.push_back( p[2] ); } @@ -1548,7 +1794,6 @@ myfile.close(); } // if addedModel } // if sizeCtrPt } - int wxContourMainFrame::GetImageDataSizeZ(){ return _theViewPanel->GetImageDataSizeZ(); } @@ -1585,49 +1830,61 @@ void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,i //Creates a reference line to be used as the axis of the mirroring void wxContourMainFrame::referenceLine() { - wxBusyCursor wait; - double spc[3]; + if (_refLineControl==NULL) + { + wxBusyCursor wait; + double spc[3]; + + vtkImageData *vtkimagedata = _theViewPanel->getImageData(); + vtkimagedata->GetSpacing(spc); + + wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView(); - vtkImageData *vtkimagedata = _theViewPanel->getImageData(); - vtkimagedata->GetSpacing(spc); + _refLineControl = new manualLineControler(); + _refLineModel = new manualContourModelLine(); + _refLineView = new manualViewLine(); + _refLineView->SetModel( _refLineModel ); + _refLineView->SetWxVtkBaseView( viewer2D ); + _refLineView->SetRange( 2 ); + _refLineView->SetZ( 1200 ); - wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView(); + _refLineView->SetSpacing(spc); - _refLineControl = new manualLineControler(); - _refLineModel = new manualContourModelLine(); - _refLineView = new manualViewLine(); - _refLineView->SetModel( _refLineModel ); - _refLineView->SetWxVtkBaseView( viewer2D ); - _refLineView->SetRange( 2 ); - _refLineView->SetZ( 1200 ); + _refLineView->SetColorNormalContour(0, 0, 1); + _refLineView->SetColorEditContour(0, 0.5, 0.5); + _refLineView->SetWidthLine(4); - _refLineView->SetSpacing(spc); + _refLineControl->SetModelView( _refLineModel , _refLineView ); + vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView(); + style->AddInteractorStyleMaracas( _refLineControl ); + _refLineModel->SetCloseContour(false); + _refLineControl->CreateNewManualContour(); - _refLineView->SetColorNormalContour(0, 0, 1); - _refLineView->SetColorEditContour(0, 0.5, 0.5); - _refLineView->SetWidthLine(4); +//AD: Inicializar el mirroring con una linea ya pintada + /* + double z = _refLineControl->GetZ(); - _refLineControl->SetModelView( _refLineModel , _refLineView ); - viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl ); - _refLineModel->SetCloseContour(false); - _refLineControl->CreateNewManualContour(); -/* - double z = _refLineControl->GetZ(); + int imageDim[3]; + image->GetDimensions(imageDim); + double x = (double) imageDim[0]/2; + double y1 = (double) (imageDim[1]/2)+15; + double y2 = (double) (imageDim[1]/2)-15; - _refLineModel->AddPoint(50,100,z); - _refLineModel->AddPoint(80,40,z); + _refLineControl->AddPoint(x,y1,z); + _refLineControl->AddPoint(x,y2,z); + _refLineControl->SetCompleteCreation(true); - _refLineControl->AddPoint(50,100,z); - _refLineControl->AddPoint(80,40,z); + _refLineModel->AddPoint(x,y1,z); + _refLineModel->AddPoint(x,y2,z); + _refLineModel->UpdateSpline(); - _refLineView->UpdateViewPoint(0); - _refLineView->UpdateViewPoint(1); + _refLineView->UpdateViewPoint(0); + _refLineView->UpdateViewPoint(1); + */ - _refLineControl->SetCompleteCreation(true); - _refLineControl->SetEditable(true); -*/ - _refLineControl->SetActive(true); - _refLineView->RefreshContour(); + _refLineControl->SetActive(true); + _refLineView->RefreshContour(); + } } //Hides the referenceLine @@ -1635,7 +1892,14 @@ void wxContourMainFrame::refLineHide() { if (_refLineControl!=NULL) { - _refLineView->RemoveCompleteContourActor(); + if (_refLineControl->GetActive()) + { + _refLineView->RemoveCompleteContourActor(); + _refLineControl->SetEditable(false); + _refLineControl->SetActive(false); + + RefreshInterface(); + } } } @@ -1644,22 +1908,36 @@ void wxContourMainFrame::refLineShow() { if (_refLineControl!=NULL) { - wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView(); + if (_refLineControl->GetActive()==false) + { + wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView(); - _refLineView->SetModel( _refLineModel ); - _refLineView->SetWxVtkBaseView( viewer2D ); - _refLineView->SetRange( 2 ); - _refLineView->SetZ( 1200 ); + _refLineView->SetModel( _refLineModel ); + _refLineView->SetWxVtkBaseView( viewer2D ); + _refLineView->SetRange( 2 ); + _refLineView->SetZ( 1200 ); - _refLineControl->SetModelView( _refLineModel , _refLineView ); - viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl ); - _refLineControl->CreateNewManualContour(); - //_refLineControl->SetActive(true); - //_refLineControl->SetEditable(true); - _refLineView->RefreshContour(); + _refLineControl->SetModelView( _refLineModel , _refLineView ); + vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView(); + style->AddInteractorStyleMaracas( _refLineControl ); + _refLineControl->CreateNewManualContour(); + _refLineControl->SetActive(true); + _refLineView->RefreshContour(); + + RefreshInterface(); + } } } +void wxContourMainFrame::refLineChangeWidth(int width) +{ + _refLineView->SetWidthLine(width); + _refLineView->RefreshContour(); + + RefreshInterface(); +} + + void wxContourMainFrame::onMirror() { //AD:02-09 @@ -1694,7 +1972,195 @@ void wxContourMainFrame::onMirror() //_refName = ""; } -void wxContourMainFrame::showAxis(bool show){ +void wxContourMainFrame::onThreshold() +{ + int z = _theViewPanel->GetZ(); + double range[2]; + + vtkImageData * img = getImageData(); + img->GetScalarRange(range); + + int minTot = floor (range[0]); + int maxTot = ceil (range[1]); + + double minMax[2]; + _pannew->onThresholdInstantChange(minMax); + int minVal = floor (minMax[0]); + int maxVal = floor (minMax[1]); + + if (!_actorPresent) + { + if (_imageReslicer==NULL) + { + _imageReslicer = vtkImageReslice::New(); + _imageReslicer->SetInput( img ); + _imageReslicer->SetInformationInput(img); + _imageReslicer->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1); + _imageReslicer->SetOutputDimensionality(2); + _imageReslicer->SetInterpolationModeToLinear(); + } + + _imageReslicer->SetResliceAxesOrigin(0,0,z); + + img = _imageReslicer->GetOutput(); + img->Update(); + img->UpdateInformation(); + + wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView(); + + if (_thresholdTable==NULL) + { + //Lookup Table + _thresholdTable = vtkLookupTable::New(); + _thresholdTable->SetNumberOfTableValues(maxTot+1); + _thresholdTable->SetTableRange(range); + _thresholdTable->SetAlphaRange(0, 1); + _thresholdTable->SetValueRange(0, 1); + _thresholdTable->SetSaturationRange(0, 0); + _thresholdTable->SetRampToLinear( ); + } + + //Assign a fake color for the upper image, and set the white as transparent + int i; + for(i = minTot; i <= maxTot; i++) + { + if( i >= minVal && i <= maxVal ) + { + _thresholdTable->SetTableValue(i, 1.0, 0.0, 0.0, 1); + } + else if( i >= minTot && i < minVal ) + { + _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent + } + else if( i > maxVal && i < maxTot ) + { + _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent + } + else + { + _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent + } + } + _thresholdTable->Build( ); + + if (_thresholdMapper==NULL) + { + _thresholdMapper = vtkImageMapToColors::New( ); + } + + _thresholdMapper->SetLookupTable( _thresholdTable ); + _thresholdMapper->SetInput( img ); + + if (_thresholdActor==NULL) + { + _thresholdActor = vtkImageActor::New( ); + _thresholdActor->SetOpacity( 0.6 ); + _thresholdActor->InterpolateOn( ); + _thresholdActor->SetPosition( 0,0, 900-1 ); + } + + _thresholdActor->SetInput( _thresholdMapper->GetOutput() ); + + baseView->GetRenderer()->AddActor( _thresholdActor ); + _actorPresent = true; + } + + else + { + _imageReslicer->SetResliceAxesOrigin(0,0,z); + img = _imageReslicer->GetOutput(); + img->Update(); + img->UpdateInformation(); + + //Assign a fake color for the upper image, and set the white as transparent + int i; + for(i = minTot; i <= maxTot; i++) + { + if( i >= minVal && i <= maxVal ) + { + _thresholdTable->SetTableValue(i, 1.0, 0.0, 0.0, 1); + } + else if( i >= minTot && i < minVal ) + { + _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent + } + else if( i > maxVal && i < maxTot ) + { + _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent + } + else + { + _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent + } + } + + _thresholdTable->Build( ); + _thresholdMapper->SetLookupTable( _thresholdTable ); + _thresholdMapper->SetInput( img ); + _thresholdActor->SetInput( _thresholdMapper->GetOutput() ); + } + /* + vtkImageViewer2* viewer = vtkImageViewer2::New(); + viewer->SetInput( upperImageActor->GetInput() ); + viewer->SetColorLevel((range[1]-range[0])/2); + viewer->SetColorWindow(range[1]); + viewer->GetRenderer()->AddActor( upperImageActor ); + viewer->Render(); + */ + _theViewPanel->RefreshInterface(); +} + + +void wxContourMainFrame::onThresholdChange() +{ + if (_actorPresent) + { + onThreshold(); + } +} + +void wxContourMainFrame::onThresholdInterpolation(bool interpolate) +{ + if (_thresholdActor!=NULL) + { + if (interpolate) + { + _thresholdActor->InterpolateOn( ); + } + + else + { + _thresholdActor->InterpolateOff( ); + } + + _theViewPanel->RefreshInterface(); + } +} + +void wxContourMainFrame::onThresholdChangeOpacity (int opacity) +{ + if (_actorPresent) + { + _thresholdActor->SetOpacity(opacity*0.1); + } + + _theViewPanel->RefreshInterface(); +} + +void wxContourMainFrame::onThresholdRemove() +{ + if (_actorPresent) + { + wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView(); + baseView->GetRenderer()->RemoveActor( _thresholdActor ); + _actorPresent = false; + } + + _theViewPanel->RefreshInterface(); +} + +void wxContourMainFrame::showAxis(bool show) +{ _theViewPanel->SetVisibleAxis(show); _theViewPanel->Refresh(); } @@ -1730,17 +2196,38 @@ void wxContourMainFrame::onWidthOfContour(double width){ RefreshInterface(); } -int wxContourMainFrame::getColorWindow(){ + +int wxContourMainFrame::getColorWindow() +{ + /* + double range[2]; + vtkImageData * img = getImageData(); + img->GetScalarRange(range); + + std::cout<<"Val 1: "<getColorWindow(); } -int wxContourMainFrame::getWindowLevel(){ + +int wxContourMainFrame::getWindowLevel() +{ + /* + double range[2]; + vtkImageData * img = getImageData(); + img->GetScalarRange(range); + + std::cout<<"Val 1: "<getWindowLevel(); } void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){ _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel); - RefreshInterface(); } @@ -1842,7 +2329,8 @@ std::vector wxContourMainFrame::getOutlinesName(int slide){ return kernelManager->getOutlinesNameAtInstant(tempVector); } -void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ){ +void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ) +{ int maxContourGroup = 0; ContourExtractData *contourextractdata = new ContourExtractData(); @@ -1914,7 +2402,7 @@ void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int sel //_staticTextInformation->SetLabel(tmpString); //Extraction data from contours of each slice - contourextractdata->SetZtoBeAnalys( z); + contourextractdata->SetZtoBeAnalys(z); tempVector[1]=z; Instant instant(&tempVector); @@ -2033,41 +2521,62 @@ void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int sel delete contourextractdata; } -void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename, int typeContourGroup){ - SaveValuesXYZ( directory , namefile, typeContourGroup ); - SaveImageResult( directory , namefile, typeContourGroup); +//AD: 29-05-09 +void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename, + int typeContourGroup, bool XYZValues, bool contourImage, bool statistics) +{ + if (XYZValues) + { + SaveValuesXYZ( directory , namefile, typeContourGroup ); + } + if (contourImage) + { + vtkImageData * mask; + vtkImageData * value; + this->getMaskValue(&mask, &value, typeContourGroup); + this->SaveImageResult( directory , namefile, mask, value); + } - FILE *pFile=fopen(filename.c_str(),"w+"); + if (statistics) + { + std::ostringstream name; + name << filename << ".xls"; + - int sizeZ = _theViewPanel->GetImageDataSizeZ(); + FILE *pFile=fopen(name.str().c_str(),"w+"); - wxString tmpString; - int i,j,maxX,maxY=sizeZ; - maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols(); + int sizeZ = _theViewPanel->GetImageDataSizeZ(); - int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics); - for ( iTitle=0; iTitlegetNumberColsInformationPanel();//this->_grid->GetNumberCols(); + int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics); + for ( iTitle=0; iTitlegetCellValue(j, i);//_grid->GetCellValue( j , i ); - fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) ); - } // for i - fprintf(pFile,"\n" ); - } // for j - fclose(pFile); + for ( j=0; jgetCellValue(j, i);//_grid->GetCellValue( j , i ); + fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) ); + } // for i + fprintf(pFile,"\n" ); + } // for j + + fclose(pFile); + } } +//AD: 29-05-09 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup) { wxBusyCursor wait; @@ -2194,8 +2703,7 @@ void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefil delete contourextractdata; } -void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, int typeContourGroup) -{ +void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup){ wxBusyCursor wait; ContourExtractData *contourextractdata = new ContourExtractData( true ); //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection(); @@ -2274,20 +2782,19 @@ void wxContourMainFrame::SaveImageResult(std::string directory,std::string namef } contourextractdata->SetLstManualContourModel( lstManConModTmp ); - - -// for (ii=0 ; iigetModel() ); -// } -// contourextractdata->SetLstManualContourModel( lstManConMod ); - contourextractdata->CalculateImageResult(); // with actual Z } // for iContourGroup } // for z + (*value) = contourextractdata->GetVtkImageValueResult(); + (*mask) = contourextractdata->GetVtkImageMaskResult(); + delete contourextractdata; +} + +void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value) +{ + std::string temp = directory + "/" + namefile + "-Value.mhd"; wxString filename = crea::std2wx(temp); @@ -2301,7 +2808,7 @@ void wxContourMainFrame::SaveImageResult(std::string directory,std::string namef // Image Value vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( ); - writerValueImage->SetInput( contourextractdata->GetVtkImageValueResult() ); + writerValueImage->SetInput( value ); writerValueImage->SetFileName( (const char *)filename.mb_str() ); writerValueImage->SetFileDimensionality( 3 ); writerValueImage->Write( ); @@ -2320,15 +2827,17 @@ void wxContourMainFrame::SaveImageResult(std::string directory,std::string namef filename.append(_T("-Mask.mhd"));*/ vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( ); - writerMaskImage->SetInput( contourextractdata->GetVtkImageMaskResult() ); + writerMaskImage->SetInput( mask ); writerMaskImage->SetFileName( (const char *)filename.mb_str() ); writerMaskImage->SetFileDimensionality( 3 ); writerMaskImage->Write( ); interfMainPanel::getInstance()->setStringInfoPanel( _T("") ); - delete contourextractdata; + } + + void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){ if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){ _theViewPanel->setActualVertical( value); @@ -2358,7 +2867,8 @@ void wxContourMainFrame::onSnakePressed(){ wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake"))); wxPanel* panel = new wxPanel(dialog,-1); - wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake"))); + // wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake"))); + new wxStaticText(panel, -1, wxString(_T("Panel para snake"))); dialog->ShowModal(); } // if @@ -2371,4 +2881,8 @@ void wxContourMainFrame::saveFileWithContoursAutomatique(){ }else{ onSave(); } -} \ No newline at end of file +} +void wxContourMainFrame::ShowToolsPanel(bool show){ + _pannew->Show(show); +} +