X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=octave_packages%2Fm%2Fstatistics%2Fbase%2Fkendall.m;fp=octave_packages%2Fm%2Fstatistics%2Fbase%2Fkendall.m;h=6907fc08d75f16408fbb989514ed7380e7529c30;hb=1c0469ada9531828709108a4882a751d2816994a;hp=0000000000000000000000000000000000000000;hpb=63de9f36673d49121015e3695f2c336ea92bc278;p=CreaPhase.git diff --git a/octave_packages/m/statistics/base/kendall.m b/octave_packages/m/statistics/base/kendall.m new file mode 100644 index 0000000..6907fc0 --- /dev/null +++ b/octave_packages/m/statistics/base/kendall.m @@ -0,0 +1,134 @@ +## Copyright (C) 1995-2012 Kurt Hornik +## +## This file is part of Octave. +## +## Octave is free software; you can redistribute it and/or modify it +## under the terms of the GNU General Public License as published by +## the Free Software Foundation; either version 3 of the License, or (at +## your option) any later version. +## +## Octave is distributed in the hope that it will be useful, but +## WITHOUT ANY WARRANTY; without even the implied warranty of +## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +## General Public License for more details. +## +## You should have received a copy of the GNU General Public License +## along with Octave; see the file COPYING. If not, see +## . + +## -*- texinfo -*- +## @deftypefn {Function File} {} kendall (@var{x}) +## @deftypefnx {Function File} {} kendall (@var{x}, @var{y}) +## @cindex Kendall's Tau +## Compute Kendall's @var{tau}. +## +## For two data vectors @var{x}, @var{y} of common length @var{n}, +## Kendall's @var{tau} is the correlation of the signs of all rank +## differences of @var{x} and @var{y}; i.e., if both @var{x} and +## @var{y} have distinct entries, then +## +## @tex +## $$ \tau = {1 \over n(n-1)} \sum_{i,j} {\rm sign}(q_i-q_j) {\rm sign}(r_i-r_j) $$ +## @end tex +## @ifnottex +## +## @example +## @group +## 1 +## tau = ------- SUM sign (q(i) - q(j)) * sign (r(i) - r(j)) +## n (n-1) i,j +## @end group +## @end example +## +## @end ifnottex +## @noindent +## in which the +## @tex +## $q_i$ and $r_i$ +## @end tex +## @ifnottex +## @var{q}(@var{i}) and @var{r}(@var{i}) +## @end ifnottex +## are the ranks of @var{x} and @var{y}, respectively. +## +## If @var{x} and @var{y} are drawn from independent distributions, +## Kendall's @var{tau} is asymptotically normal with mean 0 and variance +## @tex +## ${2 (2n+5) \over 9n(n-1)}$. +## @end tex +## @ifnottex +## @code{(2 * (2@var{n}+5)) / (9 * @var{n} * (@var{n}-1))}. +## @end ifnottex +## +## @code{kendall (@var{x})} is equivalent to @code{kendall (@var{x}, +## @var{x})}. +## @seealso{ranks, spearman} +## @end deftypefn + +## Author: KH +## Description: Kendall's rank correlation tau + +function tau = kendall (x, y = []) + + if (nargin < 1 || nargin > 2) + print_usage (); + endif + + if ( ! (isnumeric (x) || islogical (x)) + || ! (isnumeric (y) || islogical (y))) + error ("kendall: X and Y must be numeric matrices or vectors"); + endif + + if (ndims (x) != 2 || ndims (y) != 2) + error ("kendall: X and Y must be 2-D matrices or vectors"); + endif + + if (isrow (x)) + x = x.'; + endif + [n, c] = size (x); + + if (nargin == 2) + if (isrow (y)) + y = y.'; + endif + if (rows (y) != n) + error ("kendall: X and Y must have the same number of observations"); + else + x = [x, y]; + endif + endif + + if (isa (x, 'single') || isa (y, 'single')) + cls = 'single'; + else + cls = 'double'; + endif + r = ranks (x); + m = sign (kron (r, ones (n, 1, cls)) - kron (ones (n, 1, cls), r)); + tau = corr (m); + + if (nargin == 2) + tau = tau(1 : c, (c + 1) : columns (x)); + endif + +endfunction + + +%!test +%! x = [1:2:10]; +%! y = [100:10:149]; +%! assert (kendall (x,y), 1, 5*eps); +%! assert (kendall (x,fliplr (y)), -1, 5*eps); + +%!assert (kendall (logical(1)), 1); +%!assert (kendall (single(1)), single(1)); + +%% Test input validation +%!error kendall (); +%!error kendall (1, 2, 3); +%!error kendall (['A'; 'B']); +%!error kendall (ones(2,1), ['A'; 'B']); +%!error kendall (ones (2,2,2)); +%!error kendall (ones (2,2), ones (2,2,2)); +%!error kendall (ones (2,2), ones (3,2));