X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=packages%2Fgdcmvtk%2Fsrc%2FbbgdcmvtkGetInfoGdcmReader.cxx;h=9ef547f624a250136985b9f2d42d74d09e2a5554;hb=cfad95b6e08e6e53846ffcda7fbc5932065f2c47;hp=07da598549592d325533c17d2c0a8562c57c2218;hpb=64953af6e7389a36c4fb533b58bf720ba1342cd7;p=bbtk.git

diff --git a/packages/gdcmvtk/src/bbgdcmvtkGetInfoGdcmReader.cxx b/packages/gdcmvtk/src/bbgdcmvtkGetInfoGdcmReader.cxx
index 07da598..9ef547f 100644
--- a/packages/gdcmvtk/src/bbgdcmvtkGetInfoGdcmReader.cxx
+++ b/packages/gdcmvtk/src/bbgdcmvtkGetInfoGdcmReader.cxx
@@ -1,10 +1,43 @@
+# ---------------------------------------------------------------------
+#
+# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+#                        pour la SantÈ)
+# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+# Previous Authors : Laurent Guigues, Jean-Pierre Roux
+# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+#
+#  This software is governed by the CeCILL-B license under French law and
+#  abiding by the rules of distribution of free software. You can  use,
+#  modify and/ or redistribute the software under the terms of the CeCILL-B
+#  license as circulated by CEA, CNRS and INRIA at the following URL
+#  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+#  or in the file LICENSE.txt.
+#
+#  As a counterpart to the access to the source code and  rights to copy,
+#  modify and redistribute granted by the license, users are provided only
+#  with a limited warranty  and the software's author,  the holder of the
+#  economic rights,  and the successive licensors  have only  limited
+#  liability.
+#
+#  The fact that you are presently reading this means that you have had
+#  knowledge of the CeCILL-B license and that you accept its terms.
+# ------------------------------------------------------------------------ */
+
 #include "bbgdcmvtkGetInfoGdcmReader.h"
 #include "bbgdcmvtkPackage.h"
 
-#include "gdcmFile.h"
-#include "gdcmFileHelper.h"
-#include "vtkImageData.h"
-#include "vtkGdcmReader.h"
+#if defined USE_GDCM
+	#include "gdcmFile.h"
+	#include "gdcmFileHelper.h"
+	#include "vtkImageData.h"
+	#include "vtkGdcmReader.h"
+#endif
+#if defined USE_GDCM2
+	#include <gdcmReader.h>
+//	#include "vtkImageData.h"	
+	#include <gdcmImageHelper.h>
+	#include <vtkGDCMImageReader.h>
+#endif
 #include <vtkIndent.h>
 
 namespace bbgdcmvtk
@@ -12,6 +45,8 @@ namespace bbgdcmvtk
 
 BBTK_ADD_BLACK_BOX_TO_PACKAGE(gdcmvtk,GetInfoGdcmReader)
 BBTK_BLACK_BOX_IMPLEMENTATION(GetInfoGdcmReader,bbtk::AtomicBlackBox);
+
+#if defined USE_GDCM
 void GetInfoGdcmReader::Process()
 {
 	// Reset de reader, f
@@ -26,11 +61,12 @@ void GetInfoGdcmReader::Process()
       bbSetOutputOut(0);
       return;
    }
- // Get info from the image file
+ // Get info from THE image file (only *one* as input)
    int i;
    std::vector<double> v_iop;
    float iop[6];
    f->GetImageOrientationPatient(iop);
+   
    for(i=0; i< 6; i++)
       v_iop.push_back(iop[i]);
    bbSetOutputIOP(v_iop );
@@ -38,6 +74,7 @@ void GetInfoGdcmReader::Process()
    std::vector<double> v_ipp;
    float ipp[3];
    f->GetImagePositionPatient(ipp);
+   
    for(i=0; i< 3; i++)
       v_ipp.push_back(ipp[i]);
    bbSetOutputIPP(v_ipp );
@@ -45,7 +82,9 @@ void GetInfoGdcmReader::Process()
    std::vector<double> v_pixelspacing;
    v_pixelspacing.push_back(f->GetXSpacing());
    v_pixelspacing.push_back(f->GetYSpacing());
-   if (f->GetZSize() != 1) {
+   
+   if (f->GetZSize() != 1) 
+   {
       v_pixelspacing.push_back(f->GetZSpacing());
    }
    bbSetOutputPixelSpacing(v_pixelspacing);
@@ -62,34 +101,110 @@ void GetInfoGdcmReader::Process()
    reader->GetOutput()->PrintSelf(std::cout, indent);
    bbSetOutputOut( reader->GetOutput() );
 }
+#endif
+
+#if defined USE_GDCM2
+void GetInfoGdcmReader::Process()
+{
+	// Reset de reader, f
+	bbUserFinalizeProcessing();
+	gdcm::Reader *read = new gdcm::Reader();
+	read->SetFileName( bbGetInputIn().c_str());
+  
+	bool res = read->Read();  
+   if ( !res )
+   {
+      delete read;
+      bbSetOutputOut(0);
+      return;
+   }
+   
+ // Get info from THE image file (only *one* as input)
+   const gdcm::File &f = read->GetFile();
+   
+   // Image Orientation (Patient)
+   int i;
+   std::vector<double> v_iop;
+   const gdcm::DataElement &deIop = f.GetDataSet().GetDataElement(gdcm::Tag(0x0020, 0x0037));
+   std::stringstream ss;
+   deIop.GetValue().Print(ss);
+   gdcm::Element<gdcm::VR::DS,gdcm::VM::VM6> iop;
+   iop.Read( ss );
+   for(i=0; i< 6; i++)
+      v_iop.push_back((float)(iop[i]));
+   bbSetOutputIOP(v_iop );
+ 
+   // Image Position (Patient)
+   std::vector<double> v_ipp;
+   const gdcm::DataElement &deIpp = f.GetDataSet().GetDataElement(gdcm::Tag((0x0020,0x0032)));
+   deIpp.GetValue().Print(ss);
+   gdcm::Element<gdcm::VR::DS,gdcm::VM::VM3> ipp;
+   ipp.Read( ss );
+	  for(i=0; i< 3; i++)
+		v_ipp.push_back((float)(ipp[i]));
+   bbSetOutputIPP(v_ipp );
+
+   std::vector<double> v_pixelspacing = gdcm::ImageHelper::GetSpacingValue(f);
+   bbSetOutputPixelSpacing(v_pixelspacing);
+   
+   //double interslice; ?? ==1 NO?
+    bbSetOutputInterSlice(v_pixelspacing[2]);
+   
+   reader = vtkGDCMImageReader::New();
+   reader->SetFileName( bbGetInputIn().c_str() );
+   reader->Update();
+   reader->GetOutput();
+   vtkIndent indent ;
+   reader->GetOutput()->PrintSelf(std::cout, indent);
+   bbSetOutputOut( reader->GetOutput() );
+}
+#endif
+
 
 void GetInfoGdcmReader::bbUserSetDefaultValues()
 {
-	reader=NULL;
-	f=NULL;
-    bbSetInputIn("");  
+#if defined USE_GDCM2
+   read=NULL;
+#endif   
+#if defined USE_GDCM
+   reader=NULL;
+   f=NULL;
+#endif
+   bbSetInputIn("");  
 }
 
+
 void GetInfoGdcmReader::bbUserInitializeProcessing()
 {
 }
-	
-	
-	
+
+
 void GetInfoGdcmReader::bbUserFinalizeProcessing()
 {
-	if(reader){
+#if defined USE_GDCM2
+   if( reader )
+   {
       reader->Delete();
-	  reader=NULL;
-	}
-	if(f){
+      reader=NULL;
+   }
+#endif
+
+#if defined USE_GDCM	
+   if( reader )
+   {
+      reader->Delete();
+      reader=NULL;
+   }   
+
+   if(f)
+   {
       f->Delete();
-	  f=NULL;
-	}
-	
+      f=NULL;
+   }	
+#endif
 }
-
 }
+
 // EO namespace bbgdcmvtk