X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=registration%2FclitkAffineRegistrationGenericFilter.cxx;h=2c94379e99e1f8411710e20e968b82c96b3467a5;hb=5578995d9a82792833333eeb3dd5c8ecac967293;hp=f369e0506e838492f560f5f8e525771bf8cd377c;hpb=1e6e00bdcdb79d94c23432f848ba7fdbd057e64c;p=clitk.git

diff --git a/registration/clitkAffineRegistrationGenericFilter.cxx b/registration/clitkAffineRegistrationGenericFilter.cxx
index f369e05..2c94379 100644
--- a/registration/clitkAffineRegistrationGenericFilter.cxx
+++ b/registration/clitkAffineRegistrationGenericFilter.cxx
@@ -20,6 +20,45 @@
 #define CLITKAFFINEREGISTRATIONGENERICFILTER_CXX
 
 #include "clitkAffineRegistrationGenericFilter.h"
+// clitk include
+#include "clitkIO.h"
+#include "clitkCommon.h"
+#include "clitkImageCommon.h"
+#include "clitkAffineRegistration_ggo.h"
+#include "clitkImageArithm_ggo.h"
+#include "clitkCorrelationRatioImageToImageMetric.h"
+#include "clitkTransformUtilities.h"
+#include "clitkGenericMetric.h"
+#include "clitkGenericOptimizer.h"
+#include "clitkGenericInterpolator.h"
+#include "clitkGenericAffineTransform.h"
+#include "clitkImageToImageGenericFilter.h"
+
+
+//itk include
+#include <itkMultiResolutionImageRegistrationMethod.h>
+#include <itkMultiResolutionPyramidImageFilter.h>
+#include <itkImageToImageMetric.h>
+#include <itkEuler2DTransform.h>
+#include <itkCenteredEuler3DTransform.h>
+#include <itkImage.h>
+#include <itkResampleImageFilter.h>
+#include <itkCastImageFilter.h>
+#include <itkNormalizeImageFilter.h>
+#include <itkDiscreteGaussianImageFilter.h>
+#include <itkImageMaskSpatialObject.h>
+#include <itkCommand.h>
+#include <itkCheckerBoardImageFilter.h>
+#include <itkSubtractImageFilter.h>
+#include <itkLightObject.h>
+#include <itkImageMomentsCalculator.h>
+#include <itkThresholdImageFilter.h>
+
+// other includes
+#include <time.h>
+#include <iostream>
+#include <iomanip>
+
 
 namespace clitk
 {
@@ -321,7 +360,7 @@ void AffineRegistrationGenericFilter::UpdateWithInputImageType()
   // If given, we connect a mask to reference or target
   //============================================================================
   typedef itk::ImageMaskSpatialObject<  InputImageType::ImageDimension >   MaskType;
-  typename MaskType::Pointer  fixedMask=NULL;
+  typename MaskType::Pointer  fixedMask=ITK_NULLPTR;
   if (m_ArgsInfo.referenceMask_given) {
     fixedMask= MaskType::New();
     typedef itk::Image< unsigned char, InputImageType::ImageDimension >   ImageMaskType;
@@ -342,7 +381,7 @@ void AffineRegistrationGenericFilter::UpdateWithInputImageType()
   }
 
   typedef itk::ImageMaskSpatialObject<  InputImageType::ImageDimension >   MaskType;
-  typename MaskType::Pointer  movingMask=NULL;
+  typename MaskType::Pointer  movingMask=ITK_NULLPTR;
   if (m_ArgsInfo.targetMask_given) {
     movingMask= MaskType::New();
     typedef itk::Image< unsigned char, InputImageType::ImageDimension >   ImageMaskType;
@@ -393,7 +432,13 @@ void AffineRegistrationGenericFilter::UpdateWithInputImageType()
   typename  MetricType::Pointer metric=genericMetric->GetMetricPointer();
   if (movingMask) metric->SetMovingImageMask(movingMask);
 
-  if (threadsGiven) metric->SetNumberOfThreads( threads );
+  if (threadsGiven) {
+#if ITK_VERSION_MAJOR <= 4
+    metric->SetNumberOfThreads( threads );
+#else
+    metric->SetNumberOfWorkUnits( threads );
+#endif
+  }
 
   //============================================================================
   // Initialize using image moments.