X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=registration%2FclitkBLUTDIR.ggo;h=9db5646e25c8ea98b08dde443362c839eb7257d2;hb=e751b47051ae80ecd388418ae39b388f15e627eb;hp=5a98d1d16054effb8cb86d22a486786f92319246;hpb=b19b2e28476b45595584110623b360e1b6edbb5a;p=clitk.git

diff --git a/registration/clitkBLUTDIR.ggo b/registration/clitkBLUTDIR.ggo
old mode 100755
new mode 100644
index 5a98d1d..9db5646
--- a/registration/clitkBLUTDIR.ggo
+++ b/registration/clitkBLUTDIR.ggo
@@ -18,13 +18,14 @@ section "Input"
 
 option "reference"		r	"Input reference 3D image (float)"	string 		yes
 option "target"			t	"Input target	 2D image (float)"	string 		yes
-option "referenceMask" 		m 	"Mask to placed over the reference image"		  string	 	no
+option "referenceMask" 		m 	"Mask or labels to placed over the reference image"		  string	 	no
 option "targetMask" 		- 	"Mask to placed over the target image"		  string	 	no
 
 section "Output"
 
 option "vf"			-	"Result DVF"				string 		yes
 option "coeff"			-	"Result coefficient images"		string 		no 	
+option "coeffEveryN"		-	"Result coefficient images at every N iterations (requires --coeff and --verbose)"		int		no		default="20"
 option "output"			o	"Deformed target image"			string 		yes
 option "before"			-	"Difference image before (but after rigid transform)"		string 		no
 option "after"			-	"Difference image after "		string 		no
@@ -33,12 +34,13 @@ option "after"			-	"Difference image after "		string 		no
 section "Transform (Note that only one of --control, --spacing is required. The other will be adjusted to fit the region and allow exact representation. SamplingFactor will be set accordingly"
 
 option "initMatrix"		-	"Prior rigid/affine transform matrix from reference to target space"	string	 	no	
+option "centre"   - "Centre images before starting registration (ignored if initMatrix was given)"  flag    off
 option "initCoeff"		-	"Initial coefficient image"					    	string		no
 option "order"			-	"Spline Order FFD"						int 	  no  	multiple        default="3"
 option "control"		-	"Internal control points for each dimension"			int	  no 	multiple	
 option "spacing"		-	"Control point spacing for each dimension (mm)"			double	  no	multiple	
 option "samplingFactor"		-	"LUT sampling factor"						int	  no	multiple	
-
+option "itkbspline"             -       "Use ITK BSpline instead of multilabel BLUT for debug"          flag      off
 
 section "Interpolator"
 
@@ -80,8 +82,10 @@ option "lowerBound"	-	"7: The lower bound"							double 	no	default="0.0"
 option "upperBound"	-	"7: The upper bound"							double 	no	default="0.0"
 
 
-Section "Registration"
+section "Registration"
 
-option "levels"		-       "Number of resolution levels"	 				int	no	default="1"						
+option "levels"		-       "Number of resolution levels"	 				int	no	default="1"
+option "skipLastPyramidLevel"		-       "Skip full resolution pyramid level"	 	flag	off
 option "intermediate"		-       "Write the coefficient image of the intermediate levels (provide levels filenames)"	 				string	no	multiple						
 
+