X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=registration%2FclitkDemonsDeformableRegistrationGenericFilter.txx;h=6132dc5897ae115d57fd9117e93cfd954a024307;hb=2b4ec898fdd6dc8ea5780c0e30c7124272a4202e;hp=55406bb5b38a1933356e7d2750de3b1c0de1762f;hpb=657652a78c2e2717a6f77e027049173442ca29f0;p=clitk.git

diff --git a/registration/clitkDemonsDeformableRegistrationGenericFilter.txx b/registration/clitkDemonsDeformableRegistrationGenericFilter.txx
old mode 100755
new mode 100644
index 55406bb..6132dc5
--- a/registration/clitkDemonsDeformableRegistrationGenericFilter.txx
+++ b/registration/clitkDemonsDeformableRegistrationGenericFilter.txx
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
 #ifndef __clitkDemonsDeformableRegistrationGenericFilter_txx
 #define __clitkDemonsDeformableRegistrationGenericFilter_txx
 #include "clitkDemonsDeformableRegistrationGenericFilter.h"
@@ -151,8 +151,12 @@ namespace clitk
     //find the multiresolution filter
     //     typedef typename  RegistrationFilterType::FixedImageType InternalImageType;
     //     typedef typename  RegistrationFilterType::MovingImageType MovingImageType;
-    typedef typename  RegistrationFilterType::DeformationFieldType DeformationFieldType;
-    typedef clitk::MultiResolutionPDEDeformableRegistration<FixedImageType, MovingImageType, DeformationFieldType> MultiResolutionRegistrationType; 
+#if ITK_VERSION_MAJOR >= 4
+    typedef typename  RegistrationFilterType::DisplacementFieldType DisplacementFieldType;
+#else
+    typedef typename  RegistrationFilterType::DeformationFieldType DisplacementFieldType;
+#endif
+    typedef clitk::MultiResolutionPDEDeformableRegistration<FixedImageType, MovingImageType, DisplacementFieldType> MultiResolutionRegistrationType;
     typedef CommandResolutionLevelUpdate<MultiResolutionRegistrationType> LevelObserver;
     
   protected:
@@ -348,7 +352,7 @@ namespace clitk
     //------------------------------------
     //Set the number of iterations
     //------------------------------------
-    unsigned int nIterations[nLevels];
+    std::vector<unsigned int> nIterations(nLevels);
     for (unsigned int i=0 ; i<nLevels; i++)
       {
 	if (m_ArgsInfo.maxIter_given==nLevels)
@@ -358,7 +362,7 @@ namespace clitk
 	else
 	  nIterations[i]=m_ArgsInfo.maxIter_arg[0];
       }
-    multiResolutionFilter->SetNumberOfIterations( nIterations );
+    multiResolutionFilter->SetNumberOfIterations( &(nIterations[0]) );
     if(m_Verbose) {
       std::cout<<"Setting the number of iterations to: "<<nIterations[0];
       for (unsigned int i=1; i<nLevels; i++)
@@ -369,7 +373,7 @@ namespace clitk
     //------------------------------------
     //Set the max RMS error for the field update
     //------------------------------------
-    double maxRMSError[nLevels];
+    std::vector<double> maxRMSError(nLevels);
     for (unsigned int i=0 ; i<nLevels; i++)
       {
 	if (m_ArgsInfo.maxRMSError_given==nLevels)	
@@ -387,7 +391,7 @@ namespace clitk
     //------------------------------------
     //Get the stop criterion
     //------------------------------------
-    int stop[nLevels];
+    std::vector<int> stop(nLevels);
     for (unsigned int i=0; i<nLevels; i++)
       if (m_ArgsInfo.stop_given==nLevels)
 	stop[i]=m_ArgsInfo.stop_arg[i];
@@ -442,7 +446,7 @@ namespace clitk
     typename CommandResolutionLevelUpdate<MultiResolutionRegistrationFilterType>::Pointer levelObserver = 
       CommandResolutionLevelUpdate<MultiResolutionRegistrationFilterType>::New();
     multiResolutionFilter->AddObserver( itk::IterationEvent(), levelObserver );
-    levelObserver->SetMaxRMSError(maxRMSError);
+    levelObserver->SetMaxRMSError(&(maxRMSError[0]));
     levelObserver->SetMaxStep(m_ArgsInfo.maxStep_arg);
     levelObserver->SetSD(sd);
     levelObserver->SetScaleStep(m_ArgsInfo.scaleStep_flag);
@@ -464,7 +468,7 @@ namespace clitk
 	m->SetIntensityDifferenceThreshold( m_ArgsInfo.intThreshold_arg);
 	m->SetUseMovingImageGradient( m_ArgsInfo.movGrad_flag);
 	typename CommandIterationUpdate<DemonsFilterType, FixedImageType, MovingImageType>::Pointer observer = CommandIterationUpdate<DemonsFilterType, FixedImageType, MovingImageType>::New();
-	observer->SetStop(stop);
+	observer->SetStop(&(stop[0]));
 	observer->SetLevelObserver(levelObserver);
 	m->AddObserver( itk::IterationEvent(), observer );
 	if (m_Verbose)  std::cout<<"Using the demons registration filter..."<<std::endl;
@@ -480,7 +484,7 @@ namespace clitk
 	//Set Parameters for this filter
 	m->SetIntensityDifferenceThreshold( m_ArgsInfo.intThreshold_arg);
 	typename CommandIterationUpdate<DemonsFilterType, FixedImageType, MovingImageType>::Pointer observer = CommandIterationUpdate<DemonsFilterType, FixedImageType, MovingImageType>::New();
-	observer->SetStop(stop);
+	observer->SetStop(&(stop[0]));
 	observer->SetLevelObserver(levelObserver);
 	m->AddObserver( itk::IterationEvent(), observer );
 	if (m_Verbose) std::cout<<"Using the symmetric forces demons registration filter..."<<std::endl;
@@ -498,7 +502,7 @@ namespace clitk
 	m->SetMaximumUpdateStepLength( m_ArgsInfo.maxStep_arg);
 	m->SetUseGradientType(grad);
 	typename CommandIterationUpdate<DemonsFilterType, FixedImageType, MovingImageType>::Pointer observer = CommandIterationUpdate<DemonsFilterType, FixedImageType, MovingImageType>::New();
-	observer->SetStop(stop);
+	observer->SetStop(&(stop[0]));
 	observer->SetLevelObserver(levelObserver);
 	m->AddObserver( itk::IterationEvent(), observer );
   	if (m_Verbose) std::cout<<"Using the fast symmetric forces demons registration filter..."<<std::endl;
@@ -516,7 +520,7 @@ namespace clitk
 	m->SetUseFirstOrderExp(m_ArgsInfo.firstOrder_flag);
 	m->SetUseGradientType(grad);
 	typename CommandIterationUpdate<DemonsFilterType, FixedImageType, MovingImageType>::Pointer observer = CommandIterationUpdate<DemonsFilterType, FixedImageType, MovingImageType>::New();
-	observer->SetStop(stop);
+	observer->SetStop(&(stop[0]));
 	observer->SetLevelObserver(levelObserver);
 	m->AddObserver( itk::IterationEvent(), observer );
 	if (m_Verbose) std::cout<<"Using the diffeomorphic demons registration filter..."<<std::endl;
@@ -533,7 +537,11 @@ namespace clitk
     //JV TODO
     // pdeFilter->SetMaximumError(m_ArgsInfo.maxError_arg);
     // pdeFilter->SetMaximumKernelWidth(m_ArgsInfo.maxError_arg);
+#if ITK_VERSION_MAJOR >= 4
+    pdeFilter->SetSmoothDisplacementField(!m_ArgsInfo.fluid_flag);
+#else
     pdeFilter->SetSmoothDeformationField(!m_ArgsInfo.fluid_flag);
+#endif
     pdeFilter->SetSmoothUpdateField(m_ArgsInfo.fluid_flag);
     pdeFilter->SetUseImageSpacing( m_ArgsInfo.spacing_flag );
 
@@ -599,7 +607,11 @@ namespace clitk
     typedef itk::WarpImageFilter< MovingImageType, FixedImageType, DeformationFieldType >    WarpFilterType;
     typename WarpFilterType::Pointer warp = WarpFilterType::New();
 
+#if ITK_VERSION_MAJOR >= 4
+    warp->SetDisplacementField( deformationField );
+#else
     warp->SetDeformationField( deformationField );
+#endif
     warp->SetInput( movingImageReader->GetOutput() );
     warp->SetOutputOrigin(  fixedImage->GetOrigin() );
     warp->SetOutputSpacing( fixedImage->GetSpacing() );