X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=registration%2FclitkShapedBLUTSpatioTemporalDeformableTransform.txx;h=7cc0107ec1a58facfdbe91ef6d72dfb9bbf641dd;hb=e751b47051ae80ecd388418ae39b388f15e627eb;hp=7600276d8c0e4397e62ced6fcf8ef752741f60b6;hpb=657652a78c2e2717a6f77e027049173442ca29f0;p=clitk.git

diff --git a/registration/clitkShapedBLUTSpatioTemporalDeformableTransform.txx b/registration/clitkShapedBLUTSpatioTemporalDeformableTransform.txx
old mode 100755
new mode 100644
index 7600276..7cc0107
--- a/registration/clitkShapedBLUTSpatioTemporalDeformableTransform.txx
+++ b/registration/clitkShapedBLUTSpatioTemporalDeformableTransform.txx
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
 #ifndef __clitkShapedBLUTSpatioTemporalDeformableTransform_txx
 #define __clitkShapedBLUTSpatioTemporalDeformableTransform_txx
 #include "clitkShapedBLUTSpatioTemporalDeformableTransform.h"
@@ -31,8 +31,7 @@ namespace clitk
 
   // Constructor with default arguments
   template<class TCoordRep, unsigned int NInputDimensions, unsigned int NOutputDimensions>
-  ShapedBLUTSpatioTemporalDeformableTransform<TCoordRep, NInputDimensions, NOutputDimensions>
-  ::ShapedBLUTSpatioTemporalDeformableTransform():Superclass(OutputDimension,0)
+  ShapedBLUTSpatioTemporalDeformableTransform<TCoordRep, NInputDimensions, NOutputDimensions>::ShapedBLUTSpatioTemporalDeformableTransform():Superclass(0)
   {
     unsigned int i;
     
@@ -379,7 +378,7 @@ namespace clitk
 
   // Get the number of parameters
   template<class TCoordRep, unsigned int NInputDimensions, unsigned int NOutputDimensions>
-  unsigned int
+  typename ShapedBLUTSpatioTemporalDeformableTransform<TCoordRep, NInputDimensions, NOutputDimensions>::NumberOfParametersType
   ShapedBLUTSpatioTemporalDeformableTransform<TCoordRep, NInputDimensions, NOutputDimensions>
   ::GetNumberOfParameters(void) const
   {
@@ -802,11 +801,11 @@ namespace clitk
     //=====================================
     //JV Wrap jacobian into OutputDimension X Vectorial images
     //=====================================
-    this->m_Jacobian.set_size( OutputDimension, this->GetNumberOfParameters() );
+    this->m_SharedDataBSplineJacobian.set_size( OutputDimension, this->GetNumberOfParameters() );
 
     // Use memset to set the memory
     // JV four rows of three comps of parameters
-    JacobianPixelType * jacobianDataPointer = reinterpret_cast<JacobianPixelType *>(this->m_Jacobian.data_block());
+    JacobianPixelType * jacobianDataPointer = reinterpret_cast<JacobianPixelType *>(this->m_SharedDataBSplineJacobian.data_block());
     memset(jacobianDataPointer, 0,  OutputDimension*numberOfPixels*sizeof(JacobianPixelType));
 
     for (unsigned int j=0; j<OutputDimension; j++)
@@ -1037,13 +1036,11 @@ namespace clitk
     typedef itk::PasteImageFilter<CoefficientImageType, CoefficientImageType, CoefficientImageType> PasteImageFilterType;
     typedef clitk::ExtractImageFilter<CoefficientImageType, CoefficientImageType> ExtractImageFilterType;
     typedef clitk::LinearCombinationImageFilter<CoefficientImageType, CoefficientImageType> LinearCombinationFilterType;
-    typedef itk::MultiplyByConstantImageFilter<CoefficientImageType, double, CoefficientImageType> MultiplicationFilterType;
 
     // Regions
     typename   CoefficientImageType::RegionType sourceRegion=m_PaddedCoefficientImage->GetLargestPossibleRegion();
     typename   CoefficientImageType::RegionType destinationRegion=m_PaddedCoefficientImage->GetLargestPossibleRegion();
     typename   CoefficientImageType::RegionType::SizeType sourceSize=sourceRegion.GetSize();
-    typename   CoefficientImageType::RegionType::SizeType destinationSize=destinationRegion.GetSize();    
     typename   CoefficientImageType::IndexType sourceIndex=sourceRegion.GetIndex();
     typename   CoefficientImageType::IndexType destinationIndex=destinationRegion.GetIndex();
  
@@ -2376,11 +2373,9 @@ namespace clitk
   // JV weights are identical as for transformpoint, could be done simultaneously in metric!!!!
   // Compute the Jacobian in one position 
   template<class TCoordRep, unsigned int NInputDimensions, unsigned int NOutputDimensions>
-  const 
-  typename ShapedBLUTSpatioTemporalDeformableTransform<TCoordRep, NInputDimensions, NOutputDimensions>
-  ::JacobianType & 
+  void
   ShapedBLUTSpatioTemporalDeformableTransform<TCoordRep, NInputDimensions, NOutputDimensions>
-  ::GetJacobian( const InputPointType & point ) const
+  ::ComputeJacobianWithRespectToParameters( const InputPointType & point, JacobianType & jacobian) const
   {
   
     //========================================================
@@ -2476,7 +2471,8 @@ namespace clitk
     if(m_Mask &&  !(m_Mask->IsInside(point) ) )
       {
 	// Outside: no (deformable) displacement
-	return this->m_Jacobian;
+        jacobian = m_SharedDataBSplineJacobian;
+        return;
       }	
 
     // Get index   
@@ -2486,7 +2482,8 @@ namespace clitk
     // we assume zero displacement and return the input point
     if ( !this->InsideValidRegion( m_Index ) )
       {
-	return this->m_Jacobian;
+        jacobian = m_SharedDataBSplineJacobian;
+        return;
       }
 
     // Compute interpolation weights
@@ -2654,7 +2651,7 @@ namespace clitk
       }
 
     // Return the result
-    return this->m_Jacobian;
+    jacobian = m_SharedDataBSplineJacobian;
   }