X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FCMakeLists.txt;h=0495a8f5668dbd3ee1828dfa4cb52bfe291b6734;hb=9fb52766c5d1e9b4ac8d45ea45baa567d3266dc3;hp=dfa795bd811a85a55e153e87de3850b05a53d100;hpb=e008d74b0ecdc4ca2eaae8c429901a78f9ef5c31;p=clitk.git

diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt
index dfa795b..0495a8f 100644
--- a/segmentation/CMakeLists.txt
+++ b/segmentation/CMakeLists.txt
@@ -4,48 +4,98 @@ INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
 
 #=========================================================
 
-SET( CMAKE_VERBOSE_MAKEFILE off)
+# Add Libraries used in vv and clitk to avoid recompilation
+FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
+    WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
+    SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
+ENDFOREACH(clitkTool)
+ADD_LIBRARY(clitkSegmentationGgoLib
+            clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
+            clitkAnatomicalFeatureDatabase.cxx
+            ${GGO_C_FILES})
 
 #=========================================================
 
-WRAP_GGO(clitkSegmentationFilters_GGO_C
-  clitkFillMask.ggo
-  clitkConnectedComponentLabeling.ggo
-  clitkExtractLung.ggo
-  clitkExtractPatient.ggo
-  clitkExtractBones.ggo
-  clitkExtractMediastinum.ggo
-  clitkExtractLymphStations.ggo
-)
+IF(CLITK_BUILD_SEGMENTATION)
+    WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
+    ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES})
 
-SET(clitkSegmentationFilters_SRC
-  ${clitkSegmentationFilters_GGO_C}
-)  
+    WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo)
+    ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx ${clitkFillMask_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ${ITK_LIBRARIES})
 
-ADD_LIBRARY(clitkSegmentationFilters STATIC ${clitkSegmentationFilters_SRC})
+    ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
 
-ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx clitkTestFilter_ggo.c)
-TARGET_LINK_LIBRARIES(clitkTestFilter clitkCommon ITKIO clitkSegmentationFilters ITKStatistics)
+    ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx  ${clitkExtractLung_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
 
-## Segmentation part
+    # WRAP_GGO(clitkExtractAirwaysTreeInfo_GGO_C clitkExtractAirwaysTreeInfo.ggo)
+    # ADD_EXECUTABLE(clitkExtractAirwaysTreeInfo clitkExtractAirwaysTreeInfo.cxx ${clitkExtractAirwaysTreeInfo_GGO_C})
+    # TARGET_LINK_LIBRARIES(clitkExtractAirwaysTreeInfo clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
 
-ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx)
-TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+    WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
+    ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
 
-ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx clitkFillMaskGenericFilter.cxx)
-TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+    WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo)
+    ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon clitkSegmentationGgoLib ${ITK_LIBRARIES})
 
-ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+    # WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
+    # ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C})
+    # TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid)
 
-ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractLung clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+    # WRAP_GGO(clitkExtractMediastinalVessels_GGO_C clitkExtractMediastinalVessels.ggo)
+    # ADD_EXECUTABLE(clitkExtractMediastinalVessels clitkExtractMediastinalVessels.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractMediastinalVessels_GGO_C})
+    # TARGET_LINK_LIBRARIES(clitkExtractMediastinalVessels clitkSegmentationGgoLib clitkCommon vtkHybrid)
 
-ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+    WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
+    ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
+
+    WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo)
+    ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
+
+    WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo)
+    ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkCalculateDistanceMap clitkCommon ${ITK_LIBRARIES})
+
+    WRAP_GGO(clitkLevelSetSegmentation_GGO_C clitkLevelSetSegmentation.ggo)
+    ADD_EXECUTABLE(clitkLevelSetSegmentation clitkLevelSetSegmentation.cxx clitkLevelSetSegmentationGenericFilter.cxx ${clitkLevelSetSegmentation_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkLevelSetSegmentation clitkCommon ${ITK_LIBRARIES})
+
+    WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo)
+    ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ${ITK_LIBRARIES} )
+
+    WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
+    ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx clitkRegionGrowingGenericFilter.cxx ${clitkRegionGrowing_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ${ITK_LIBRARIES})
+
+    WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
+    ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES})
+
+    WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
+    ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
+
+    WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo)
+    ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ${ITK_LIBRARIES})
+
+    # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo)
+    # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C})
+    # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid)
+
+ENDIF(CLITK_BUILD_SEGMENTATION)
+
+# ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics)
+# ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics)
 
-ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
 
-ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)