X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FCMakeLists.txt;h=d6812e0438f5d2482fded241aeff5dda4283fcd8;hb=aa0952f367362eac5675f8c170c871065e7b58b5;hp=dfa795bd811a85a55e153e87de3850b05a53d100;hpb=e008d74b0ecdc4ca2eaae8c429901a78f9ef5c31;p=clitk.git diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt index dfa795b..d6812e0 100644 --- a/segmentation/CMakeLists.txt +++ b/segmentation/CMakeLists.txt @@ -4,48 +4,125 @@ INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake) #========================================================= -SET( CMAKE_VERBOSE_MAKEFILE off) +# Add Libraries used in vv and clitk to avoid recompilation +FOREACH(clitkTool clitkExtractLung clitkExtractPatient) + WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo) + SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C}) +ENDFOREACH(clitkTool) +ADD_LIBRARY(clitkSegmentationGgoLib + clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx + clitkAnatomicalFeatureDatabase.cxx + ${GGO_C_FILES}) #========================================================= -WRAP_GGO(clitkSegmentationFilters_GGO_C - clitkFillMask.ggo - clitkConnectedComponentLabeling.ggo - clitkExtractLung.ggo - clitkExtractPatient.ggo - clitkExtractBones.ggo - clitkExtractMediastinum.ggo - clitkExtractLymphStations.ggo -) +IF(CLITK_BUILD_SEGMENTATION) + WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo) + ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C}) + TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling) + + WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo) + ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx ${clitkFillMask_GGO_C}) + TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkFillMask) + + ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C}) + TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient) + + ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx ${clitkExtractLung_GGO_C}) + TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLung) + + # WRAP_GGO(clitkExtractAirwaysTreeInfo_GGO_C clitkExtractAirwaysTreeInfo.ggo) + # ADD_EXECUTABLE(clitkExtractAirwaysTreeInfo clitkExtractAirwaysTreeInfo.cxx ${clitkExtractAirwaysTreeInfo_GGO_C}) + # TARGET_LINK_LIBRARIES(clitkExtractAirwaysTreeInfo clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES}) + # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractAirwaysTreeInfo) + + WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo) + ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C}) + TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones) + + WRAP_GGO(clitkBool_GGO_C clitkBool.ggo) + ADD_EXECUTABLE(clitkBool clitkBool.cxx ${clitkBool_GGO_C}) + TARGET_LINK_LIBRARIES(clitkBool clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkBool) + + WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo) + ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C}) + TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon clitkSegmentationGgoLib ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractMediastinum) + + WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo) + ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C}) + TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLymphStations) + + WRAP_GGO(clitkExtractMediastinalVessels_GGO_C clitkExtractMediastinalVessels.ggo) + ADD_EXECUTABLE(clitkExtractMediastinalVessels clitkExtractMediastinalVessels.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractMediastinalVessels_GGO_C}) + TARGET_LINK_LIBRARIES(clitkExtractMediastinalVessels clitkSegmentationGgoLib clitkCommon vtkHybrid) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractMediastinalVessels) + + WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo) + ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath) + + WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo) + ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoReconstruction) + + WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo) + ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C}) + TARGET_LINK_LIBRARIES(clitkCalculateDistanceMap clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkCalculateDistanceMap) + + WRAP_GGO(clitkLevelSetSegmentation_GGO_C clitkLevelSetSegmentation.ggo) + ADD_EXECUTABLE(clitkLevelSetSegmentation clitkLevelSetSegmentation.cxx clitkLevelSetSegmentationGenericFilter.cxx ${clitkLevelSetSegmentation_GGO_C}) + TARGET_LINK_LIBRARIES(clitkLevelSetSegmentation clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkLevelSetSegmentation) + + WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo) + ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C}) + TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ${ITK_LIBRARIES} ) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkAnd) + + WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo) + ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx clitkRegionGrowingGenericFilter.cxx ${clitkRegionGrowing_GGO_C}) + TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkRegionGrowing) + + WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo) + ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C}) + TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkDecomposeAndReconstruct) + + WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo) + ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask) + + WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo) + ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C}) + TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkFillImageRegion) + + # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo) + # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C}) + # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid) + # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkTestFilter) + + SET_TARGET_PROPERTIES(${SEGMENTATION_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" ) + INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE) + +ENDIF(CLITK_BUILD_SEGMENTATION) + +# ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx) +# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics) +# ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx) +# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics) -SET(clitkSegmentationFilters_SRC - ${clitkSegmentationFilters_GGO_C} -) -ADD_LIBRARY(clitkSegmentationFilters STATIC ${clitkSegmentationFilters_SRC}) - -ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx clitkTestFilter_ggo.c) -TARGET_LINK_LIBRARIES(clitkTestFilter clitkCommon ITKIO clitkSegmentationFilters ITKStatistics) - -## Segmentation part - -ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx) -TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ITKIO ITKStatistics clitkSegmentationFilters) - -ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx clitkFillMaskGenericFilter.cxx) -TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ITKIO ITKStatistics clitkSegmentationFilters) - -ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx) -TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ITKIO ITKStatistics clitkSegmentationFilters) - -ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx) -TARGET_LINK_LIBRARIES(clitkExtractLung clitkCommon ITKIO ITKStatistics clitkSegmentationFilters) - -ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx) -TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ITKIO ITKStatistics clitkSegmentationFilters) - -ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx) -TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon ITKIO ITKStatistics clitkSegmentationFilters) - -ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx) -TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)