X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FCMakeLists.txt;h=ecc136b62f217fae0f4bbf22d3698b65c46ceb66;hb=c45f077f35553cdc72396626ac601080093d273b;hp=7e79a5f731bab0584ec41361c537c3c4df3c4111;hpb=494bc435f0dc573e18f347c270f2058573380e53;p=clitk.git

diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt
index 7e79a5f..ecc136b 100644
--- a/segmentation/CMakeLists.txt
+++ b/segmentation/CMakeLists.txt
@@ -1,98 +1,63 @@
 #=========================================================
 
-INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
+# Add Libraries used in vv and clitk to avoid recompilation
+foreach(clitkTool clitkExtractLung clitkExtractPatient clitkConnectedComponentLabeling clitkRegionGrowing)
+    WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
+    set(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
+endforeach(clitkTool)
+add_library(clitkSegmentationGgoLib
+            clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
+            clitkAnatomicalFeatureDatabase.cxx
+            clitkSliceBySliceRelativePositionFilter_uchar.cxx
+            ${GGO_C_FILES})
 
 #=========================================================
 
-SET( CMAKE_VERBOSE_MAKEFILE off)
+if(CLITK_BUILD_SEGMENTATION)
+    WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
+    add_executable(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
+    target_link_libraries(clitkConnectedComponentLabeling clitkCommon)
+    set(SEGMENTATION_INSTALL clitkConnectedComponentLabeling)
 
-#=========================================================
-
-# WRAP_GGO(clitkSegmentationFilters_GGO_C
-#   clitkFillMask.ggo
-#   clitkConnectedComponentLabeling.ggo
-#   clitkExtractLung.ggo
-#   clitkExtractPatient.ggo
-#   clitkExtractBones.ggo
-#   clitkExtractMediastinum.ggo
-#   clitkExtractLymphStations.ggo
-# )
-
-# SET(clitkSegmentationFilters_SRC
-#   ${clitkSegmentationFilters_GGO_C}
-# )  
-
-# ADD_LIBRARY(clitkSegmentationFilters STATIC ${clitkSegmentationFilters_SRC})
-
-# ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx clitkTestFilter_ggo.c)
-# TARGET_LINK_LIBRARIES(clitkTestFilter clitkCommon ITKIO clitkSegmentationFilters ITKStatistics)
-
-######################################### Segmentation part
-WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
-ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
-TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ITKIO)
-
-WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo)
-ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx clitkFillMaskGenericFilter.cxx ${clitkFillMask_GGO_C})
-TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ITKIO)
-
-WRAP_GGO(clitkExtractPatient_GGO_C clitkExtractPatient.ggo)
-ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ITKIO)
-
-WRAP_GGO(clitkExtractLung_GGO_C clitkExtractLung.ggo)
-ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx ${clitkExtractLung_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractLung clitkCommon ITKIO)
-
-WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
-ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ITKIO)
-
-WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo)
-ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon ITKIO )
-
-WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
-ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx ${clitkExtractLymphStations_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkCommon ITKIO )
+    add_executable(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
+    target_link_libraries(clitkExtractPatient clitkCommon clitkSegmentationGgoLib)
+    set(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient)
 
-WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
-ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx clitkMorphoMathGenericFilter.cxx ${clitkMorphoMath_GGO_C})
-TARGET_LINK_LIBRARIES(clitkMorphoMath ITKIO clitkCommon)
+    add_executable(clitkExtractLung clitkExtractLung.cxx  ${clitkExtractLung_GGO_C})
+    target_link_libraries(clitkExtractLung clitkSegmentationGgoLib clitkCommon)
+    set(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLung)
 
-WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo)
-ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C})
-TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkCommon ITKIO )
+    WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
+    add_executable(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
+    target_link_libraries(clitkExtractBones clitkCommon clitkSegmentationGgoLib)
+    set(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones)
 
-WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo)
-ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C})
-TARGET_LINK_LIBRARIES(clitkCalculateDistanceMap clitkCommon ITKIO)
+    WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
+    add_executable(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
+    target_link_libraries(clitkMorphoMath clitkCommon)
+    set(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath)
 
-WRAP_GGO(clitkLevelSetSegmentation_GGO_C clitkLevelSetSegmentation.ggo)
-ADD_EXECUTABLE(clitkLevelSetSegmentation clitkLevelSetSegmentation.cxx clitkLevelSetSegmentationGenericFilter.cxx ${clitkLevelSetSegmentation_GGO_C})
-TARGET_LINK_LIBRARIES(clitkLevelSetSegmentation clitkCommon ITKIO)
+    WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
+    add_executable(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
+    target_link_libraries(clitkDecomposeAndReconstruct clitkCommon)
+    set(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkDecomposeAndReconstruct)
 
-# WRAP_GGO(clitkBinarizeImage_GGO_C clitkBinarizeImage.ggo)
-# ADD_EXECUTABLE(clitkBinarizeImage clitkBinarizeImage.cxx clitkBinarizeImageGenericFilter.cxx ${clitkBinarizeImage_GGO_C})
-# TARGET_LINK_LIBRARIES(clitkBinarizeImage clitkCommon ITKIO)
+    WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
+    add_executable(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
+    target_link_libraries(clitkMotionMask clitkCommon)
+    set(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask)
 
-WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo)
-ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C})
-TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ITKIO )
+    WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
+    add_executable(clitkRegionGrowing clitkRegionGrowing.cxx ${clitkRegionGrowing_GGO_C} ${clitkRelativePosition_GGO_C})
+    target_link_libraries(clitkRegionGrowing clitkCommon)
 
-WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
-ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx clitkRegionGrowingGenericFilter.cxx ${clitkRegionGrowing_GGO_C})
-TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ITKIO)
+    install(TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
 
-WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
-ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
-TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ITKIO)
+endif(CLITK_BUILD_SEGMENTATION)
 
-WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
-ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
-TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ITKIO ITKStatistics )
+# add_executable(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
+# target_link_libraries(ScalarImageMarkovRandomField1 clitkCommon ITKStatistics)
+# add_executable(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
+# target_link_libraries(ScalarImageKmeansClassifier clitkCommon ITKStatistics)
 
-WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo)
-ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C})
-TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ITKIO)