X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FCMakeLists.txt;h=f6c4096ab48d538dddf93afbaebb974502a3ddb2;hb=5a7da4aedae5c204bc55c187717193e5950f9a44;hp=0018e1f777a4eae78260b0af36595543da1e1eea;hpb=7d070bafd01a22dfef1c422097ac1a0e6935749b;p=clitk.git diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt index 0018e1f..f6c4096 100644 --- a/segmentation/CMakeLists.txt +++ b/segmentation/CMakeLists.txt @@ -1,94 +1,72 @@ #========================================================= -INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake) - -#========================================================= - -#Add your ggo files to this list if they are used by vv +# Add Libraries used in vv and clitk to avoid recompilation FOREACH(clitkTool clitkExtractLung clitkExtractPatient) WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo) SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C}) ENDFOREACH(clitkTool) -ADD_LIBRARY(clitkSegmentationGgoLib clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx clitkAnatomicalFeatureDatabase.cxx ${GGO_C_FILES}) +ADD_LIBRARY(clitkSegmentationGgoLib + clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx + clitkAnatomicalFeatureDatabase.cxx + ${GGO_C_FILES}) #========================================================= IF(CLITK_BUILD_SEGMENTATION) WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo) ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C}) - TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ITKIO) - - WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo) - ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx ${clitkFillMask_GGO_C}) - TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ITKIO) + TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling) ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C}) - TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ITKIO clitkSegmentationGgoLib) + TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient) ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx ${clitkExtractLung_GGO_C}) - TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ITKIO) - - WRAP_GGO(clitkExtractAirwaysTreeInfo_GGO_C clitkExtractAirwaysTreeInfo.ggo) - ADD_EXECUTABLE(clitkExtractAirwaysTreeInfo clitkExtractAirwaysTreeInfo.cxx ${clitkExtractAirwaysTreeInfo_GGO_C}) - TARGET_LINK_LIBRARIES(clitkExtractAirwaysTreeInfo clitkSegmentationGgoLib clitkCommon ITKIO) + TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLung) WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo) ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C}) - TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ITKIO clitkSegmentationGgoLib) + TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones) - WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo) - ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C}) - TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon clitkSegmentationGgoLib ITKStatistics ITKIO) + + WRAP_GGO(clitkRelativePosition_GGO_C ../tools/clitkRelativePosition.ggo) WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo) - ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C}) - TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon ITKIO ITKStatistics) - - WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo) - ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx clitkMorphoMathGenericFilter.cxx ${clitkMorphoMath_GGO_C}) - TARGET_LINK_LIBRARIES(clitkMorphoMath ITKIO clitkCommon) + ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C} ${clitkRelativePosition_GGO_C}) + TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLymphStations) - WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo) - ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C}) - TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkCommon ITKIO ) - - WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo) - ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C}) - TARGET_LINK_LIBRARIES(clitkCalculateDistanceMap clitkCommon ITKIO) - - WRAP_GGO(clitkLevelSetSegmentation_GGO_C clitkLevelSetSegmentation.ggo) - ADD_EXECUTABLE(clitkLevelSetSegmentation clitkLevelSetSegmentation.cxx clitkLevelSetSegmentationGenericFilter.cxx ${clitkLevelSetSegmentation_GGO_C}) - TARGET_LINK_LIBRARIES(clitkLevelSetSegmentation clitkCommon ITKIO) - - WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo) - ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C}) - TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ITKIO ) - - WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo) - ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx clitkRegionGrowingGenericFilter.cxx ${clitkRegionGrowing_GGO_C}) - TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ITKIO) + WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo) + ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C}) + TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath) WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo) ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C}) - TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ITKIO) + TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkDecomposeAndReconstruct) WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo) ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C}) - TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ITKIO ITKStatistics ) - - WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo) - ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C}) - TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ITKIO) + TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES}) + SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask) - WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo) - ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C}) - TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon ITKIO) + # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo) + # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C}) + # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid) + # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkTestFilter) + + SET_TARGET_PROPERTIES(${SEGMENTATION_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" ) + INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE) ENDIF(CLITK_BUILD_SEGMENTATION) # ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx) -# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ITKIO ITKStatistics) +# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics) # ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx) -# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ITKIO ITKStatistics) +# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics)