X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FCMakeLists.txt;h=f6c4096ab48d538dddf93afbaebb974502a3ddb2;hb=5a7da4aedae5c204bc55c187717193e5950f9a44;hp=feb99063c3448d9edb81d3fb20dc8b2995515a88;hpb=9181935185e263a306c1aabb5bbcfb6160d14f6f;p=clitk.git

diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt
index feb9906..f6c4096 100644
--- a/segmentation/CMakeLists.txt
+++ b/segmentation/CMakeLists.txt
@@ -1,94 +1,72 @@
 #=========================================================
 
-INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
+# Add Libraries used in vv and clitk to avoid recompilation
+FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
+    WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
+    SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
+ENDFOREACH(clitkTool)
+ADD_LIBRARY(clitkSegmentationGgoLib
+            clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
+            clitkAnatomicalFeatureDatabase.cxx
+            ${GGO_C_FILES})
 
 #=========================================================
 
-SET( CMAKE_VERBOSE_MAKEFILE off)
+IF(CLITK_BUILD_SEGMENTATION)
+    WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
+    ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling)
+
+    ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient)
+
+    ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx  ${clitkExtractLung_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLung)
+
+    WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
+    ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones)
+
+ 
+    WRAP_GGO(clitkRelativePosition_GGO_C ../tools/clitkRelativePosition.ggo)
+
+    WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
+    ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C} ${clitkRelativePosition_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid)
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLymphStations)
+
+     WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
+    ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath)
+
+    WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
+    ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkDecomposeAndReconstruct)
+
+    WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
+    ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask)
+
+    # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo)
+    # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C})
+    # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid)
+    # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkTestFilter)
+    
+    SET_TARGET_PROPERTIES(${SEGMENTATION_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" )  
+    INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
+
+ENDIF(CLITK_BUILD_SEGMENTATION)
+
+# ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics)
+# ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics)
 
-#=========================================================
-
-# WRAP_GGO(clitkSegmentationFilters_GGO_C
-#   clitkFillMask.ggo
-#   clitkConnectedComponentLabeling.ggo
-#   clitkExtractLung.ggo
-#   clitkExtractPatient.ggo
-#   clitkExtractBones.ggo
-#   clitkExtractMediastinum.ggo
-#   clitkExtractLymphStations.ggo
-# )
-
-# SET(clitkSegmentationFilters_SRC
-#   ${clitkSegmentationFilters_GGO_C}
-# )  
-
-# ADD_LIBRARY(clitkSegmentationFilters STATIC ${clitkSegmentationFilters_SRC})
-
-# ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx clitkTestFilter_ggo.c)
-# TARGET_LINK_LIBRARIES(clitkTestFilter clitkCommon ITKIO clitkSegmentationFilters ITKStatistics)
-
-######################################### Segmentation part
-WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
-ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
-TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ITKIO)
-
-WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo)
-ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx clitkFillMaskGenericFilter.cxx ${clitkFillMask_GGO_C})
-TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ITKIO)
-
-WRAP_GGO(clitkExtractPatient_GGO_C clitkExtractPatient.ggo)
-ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ITKIO)
-
-WRAP_GGO(clitkExtractLung_GGO_C clitkExtractLung.ggo)
-ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx ${clitkExtractLung_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractLung clitkCommon ITKIO)
-
-WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
-ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ITKIO)
-
-WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo)
-ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon ITKIO )
-
-WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
-ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx ${clitkExtractLymphStations_GGO_C})
-TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkCommon ITKIO )
-
-WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
-ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx clitkMorphoMathGenericFilter.cxx ${clitkMorphoMath_GGO_C})
-TARGET_LINK_LIBRARIES(clitkMorphoMath ITKIO clitkCommon)
-
-WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo)
-ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C})
-TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkCommon ITKIO )
-
-WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo)
-ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C})
-TARGET_LINK_LIBRARIES(clitkCalculateDistanceMap clitkCommon ITKIO)
-
-WRAP_GGO(clitkLevelSetSegmentation_GGO_C clitkLevelSetSegmentation.ggo)
-ADD_EXECUTABLE(clitkLevelSetSegmentation clitkLevelSetSegmentation.cxx clitkLevelSetSegmentationGenericFilter.cxx ${clitkLevelSetSegmentation_GGO_C})
-TARGET_LINK_LIBRARIES(clitkLevelSetSegmentation clitkCommon ITKIO)
-
-WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo)
-ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C})
-TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ITKIO )
-
-WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
-ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx clitkRegionGrowingGenericFilter.cxx ${clitkRegionGrowing_GGO_C})
-TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ITKIO)
-
-WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
-ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
-TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ITKIO)
-
-WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
-ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
-TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ITKIO ITKStatistics )
-
-WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo)
-ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C})
-TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ITKIO)