X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractBones.ggo;h=d69f92fb6fcfab221fe2bbb341bcc9ccbf589d9b;hb=48727138e88f056b67312603560e600362346462;hp=cd737e7954fe8a4f7b33e9c231e8dc49a9f8706f;hpb=5668d4a49a5a6b68dc80fa28f0f82b54187cb70c;p=clitk.git

diff --git a/segmentation/clitkExtractBones.ggo b/segmentation/clitkExtractBones.ggo
index cd737e7..d69f92f 100644
--- a/segmentation/clitkExtractBones.ggo
+++ b/segmentation/clitkExtractBones.ggo
@@ -10,6 +10,7 @@ option "verboseStep"    -  "Verbose each step"		  flag		off
 option "writeStep"      w  "Write image at each step"	  flag		off
 option "verboseOption"  -  "Display options values"       flag          off
 option "verboseWarningOff" -  "Do not display warning"    flag          off
+option "verboseMemory"  -  "Display memory usage"         flag          off
 
 section "I/O"
 
@@ -40,4 +41,8 @@ option "upper2"		-	"Upper threshold for RG"		double	no 	default="1500"
 option "radius2"	-	"Neighborhood radius"			int	no 	multiple	default="1" 
 option "sampleRate2"	-	"Sample rate of label image for RG: number of voxels to skip between seeds"	int	no 	default="0" 
 
-option "noAutoCrop"	- 	"If set : do no crop final mask to BoundingBox"	                        flag 	on
+section "Fill holes"
+option "doNotFillHoles"		-  "Do not fill holes if set"                 flag on
+option "dir"    	        d  "Directions (axes) to perform filling (defaults to 2,1,0)"	int multiple no
+
+option "noAutoCrop"	- 	"If set : do no crop final mask to BoundingBox"	                        flag 	off