X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLung.ggo;h=12dd3e7040823c00e0676c005d95ec63d7522c94;hb=eb0518a3c989812b383a96856afd562c4ebb70a0;hp=a5cf62a745e5e9069a5895db6d955dd2c14f7105;hpb=726fc21726f96f8f32015dda4c3b1efeb7d81851;p=clitk.git

diff --git a/segmentation/clitkExtractLung.ggo b/segmentation/clitkExtractLung.ggo
index a5cf62a..12dd3e7 100644
--- a/segmentation/clitkExtractLung.ggo
+++ b/segmentation/clitkExtractLung.ggo
@@ -16,9 +16,9 @@ option "verboseMemory"  -  "Display memory usage"         flag          off
 section "I/O"
 
 option "input"         i	"Input CT image filename"	  string  	yes
-option "afdb"          a	"Output Anatomical Feature DB (Carina position)"  string  no
-option "output"        o 	"Output lungs mask filename"      string 	yes
-option "outputTrachea" t 	"Output trachea mask filename"    string 	no
+option "afdb"          a	"Output Anatomical Feature DB (Carina position)"  string  no default="default.afdb"
+option "output"        o 	"Output lungs mask filename"      string 	no default="lung.mhd"
+option "outputTrachea" t 	"Output trachea mask filename"    string 	no default="trachea.mhd"
 
 section "Step 1 : Air remove"
 
@@ -61,3 +61,4 @@ section "Step 6 : fill holes"
 option "doNotFillHoles"		-  "Do not fill holes if set"                 flag on
 option "dir"    	        d  "Directions (axes) to perform filling (defaults to 2,1,0)"	int multiple no
 
+option "noAutoCrop"	- 	"If set : do no crop final mask to BoundingBox"	                        flag 	off