X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLung.ggo;h=e91a2eaed9c79344301337273ca49f55369acd47;hb=dd629343e9209aa7a536b205f390f59f00247049;hp=883a01351dcdb4cd3f6054c5a894397f16e96121;hpb=e008d74b0ecdc4ca2eaae8c429901a78f9ef5c31;p=clitk.git

diff --git a/segmentation/clitkExtractLung.ggo b/segmentation/clitkExtractLung.ggo
index 883a013..e91a2ea 100644
--- a/segmentation/clitkExtractLung.ggo
+++ b/segmentation/clitkExtractLung.ggo
@@ -16,6 +16,7 @@ section "I/O"
 option "input"         i	"Input CT image filename"	  string  	yes
 option "patient"       p	"Input patient mask filename"	  string  	yes
 option "patientBG"   -	"Patient Background"              int           default="0" no
+option "afdb"          a	"Output Anatomical Feature DB (Carina position)"    string  	no
 option "output"        o 	"Output lungs mask filename"      string 	yes
 option "outputTrachea" t 	"Output trachea mask filename"    string 	no
 
@@ -30,6 +31,7 @@ option "lastKeep1"   -	"Last label to keep"		          int		no
 
 section "Step 2 : find trachea"
 
+option "skipslices"                  -  "Number of slices to skip before searching seed" int no default="0"
 option "upperThresholdForTrachea"    -	"Initial upper threshold for trachea"  double	no  default="-900"
 option "multiplierForTrachea"	     -	"Multiplier for the region growing"    double	no  default="5"
 option "thresholdStepSizeForTrachea" -	"Threshold step size"	               int      no  default="64"