X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLungFilter.h;h=ead4d988f36597401d3684ada7e69da62ee68851;hb=6808027e48645d72771bbb0e342e8be47dd0ea92;hp=fa472ba711db3bff2c7ed8094380fc6b3505936c;hpb=6194949c0beb1589904e22381b9aba1bbface172;p=clitk.git

diff --git a/segmentation/clitkExtractLungFilter.h b/segmentation/clitkExtractLungFilter.h
index fa472ba..ead4d98 100644
--- a/segmentation/clitkExtractLungFilter.h
+++ b/segmentation/clitkExtractLungFilter.h
@@ -142,6 +142,9 @@ namespace clitk {
 
     void SetLabelizeParameters1(LabelParamType * a) { m_LabelizeParameters1 = a; }
     itkGetConstMacro(LabelizeParameters1, LabelParamType*);
+    
+    itkSetMacro(TracheaSeedAlgorithm, int);
+    itkGetConstMacro(TracheaSeedAlgorithm, int);
 
     // Step 2 options FindTrachea
     itkSetMacro(UpperThresholdForTrachea, InputImagePixelType);
@@ -153,6 +156,14 @@ namespace clitk {
     itkSetMacro(ThresholdStepSizeForTrachea, InputImagePixelType);
     itkGetConstMacro(ThresholdStepSizeForTrachea, InputImagePixelType);
 
+    // options FindTrachea2
+    itkSetMacro(NumSlices, int);
+    itkGetConstMacro(NumSlices, int);
+    itkSetMacro(MaxElongation, double);
+    itkGetConstMacro(MaxElongation, double);
+    itkSetMacro(SeedPreProcessingThreshold, int);
+    itkGetConstMacro(SeedPreProcessingThreshold, int);
+
     void AddSeed(InternalIndexType s);
     std::vector<InternalIndexType> & GetSeeds() { return  m_Seeds; }
 
@@ -191,11 +202,16 @@ namespace clitk {
     itkGetConstMacro(FillHolesFlag, bool);
     itkBooleanMacro(FillHolesFlag);
 
+    // Separate lungs
+    itkSetMacro(SeparateLungsFlag, bool);
+    itkGetConstMacro(SeparateLungsFlag, bool);
+    itkBooleanMacro(SeparateLungsFlag);
+
     // Step Auto Crop
     itkSetMacro(AutoCrop, bool);
     itkGetConstMacro(AutoCrop, bool);
     itkBooleanMacro(AutoCrop);
-
+    
   protected:
     ExtractLungFilter();
     virtual ~ExtractLungFilter() {}
@@ -226,6 +242,7 @@ namespace clitk {
     LabelParamType* m_LabelizeParameters1;
 
     // Step 2
+    int m_TracheaSeedAlgorithm;
     InputImagePixelType m_UpperThresholdForTrachea;
     InputImagePixelType m_ThresholdStepSizeForTrachea;
     double m_MultiplierForTrachea;
@@ -233,6 +250,9 @@ namespace clitk {
     int m_NumberOfSlicesToSkipBeforeSearchingSeed;
     bool m_TracheaVolumeMustBeCheckedFlag;
     bool m_VerboseRegionGrowingFlag;
+    int m_NumSlices;
+    double m_MaxElongation;
+    int m_SeedPreProcessingThreshold;
 
     // Step 3
     int m_NumberOfHistogramBins;
@@ -250,6 +270,8 @@ namespace clitk {
     bool m_FillHolesFlag;    
     InputImageSizeType m_FillHolesDirections;
 
+    bool m_SeparateLungsFlag;
+    
     // Main functions
     virtual void GenerateOutputInformation();
     virtual void GenerateInputRequestedRegion();
@@ -257,6 +279,7 @@ namespace clitk {
     
     // Functions for trachea extraction
     bool SearchForTracheaSeed(int skip);
+    bool SearchForTracheaSeed2(int numberOfSlices);
     void SearchForTrachea();
     void TracheaRegionGrowing();
     double ComputeTracheaVolume();