X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLungGenericFilter.txx;h=2fa40b124b965eb33f6dda6456f29e00c04f2ce0;hb=fa16a72aba05d2d5ac4d96a7a42627ef6d2b1df2;hp=18fc2cfa2bc161d6771f493b5fd9af445a2504a3;hpb=e008d74b0ecdc4ca2eaae8c429901a78f9ef5c31;p=clitk.git

diff --git a/segmentation/clitkExtractLungGenericFilter.txx b/segmentation/clitkExtractLungGenericFilter.txx
index 18fc2cf..2fa40b1 100644
--- a/segmentation/clitkExtractLungGenericFilter.txx
+++ b/segmentation/clitkExtractLungGenericFilter.txx
@@ -26,6 +26,7 @@ template<class ArgsInfoType>
 clitk::ExtractLungGenericFilter<ArgsInfoType>::ExtractLungGenericFilter():
   ImageToImageGenericFilter<Self>("ExtractLung") 
 {
+  this->SetFilterBase(NULL);
   // Default values
   cmdline_parser_clitkExtractLung_init(&mArgsInfo);
   InitializeImageType<3>();
@@ -78,8 +79,12 @@ void clitk::ExtractLungGenericFilter<ArgsInfoType>::UpdateWithInputImageType()
   // Create filter
   typedef clitk::ExtractLungFilter<ImageType, MaskImageType> FilterType;
   typename FilterType::Pointer filter = FilterType::New();
+
+  // Set the filter (needed for example for threaded monitoring)
+  this->SetFilterBase(filter);
     
   // Set global Options 
+  filter->SetStopOnError(this->GetStopOnError());
   filter->SetArgsInfo(mArgsInfo);
   filter->SetInput(input);
   filter->SetInputPatientMask(patient, mArgsInfo.patientBG_arg);
@@ -97,8 +102,7 @@ void clitk::ExtractLungGenericFilter<ArgsInfoType>::UpdateWithInputImageType()
   // Write/Save results
   typename OutputImageType::Pointer output = filter->GetOutput();
   this->template SetNextOutput<OutputImageType>(output); 
-  if (mArgsInfo.outputTrachea_given) 
-    this->template SetNextOutput<typename FilterType::MaskImageType>(filter->GetTracheaImage()); 
+  this->template SetNextOutput<typename FilterType::MaskImageType>(filter->GetTracheaImage()); 
 }
 //--------------------------------------------------------------------