X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLungGenericFilter.txx;h=b76b365e12ef34dca1af9e8fc50c4e8090b5e1f9;hb=5a7da4aedae5c204bc55c187717193e5950f9a44;hp=9aa03434184c7beb355385bd8fbfe92ba6a22e14;hpb=d30d301ddbebb5f290f8d9c0104dc6448ea531e1;p=clitk.git

diff --git a/segmentation/clitkExtractLungGenericFilter.txx b/segmentation/clitkExtractLungGenericFilter.txx
index 9aa0343..b76b365 100644
--- a/segmentation/clitkExtractLungGenericFilter.txx
+++ b/segmentation/clitkExtractLungGenericFilter.txx
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 #ifndef CLITKEXTRACTLUNGSGENERICFILTER_TXX
 #define CLITKEXTRACTLUNGSGENERICFILTER_TXX
@@ -89,6 +89,10 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetUpperThresholdForTrachea(mArgsInfo.upperThresholdForTrachea_arg);
   f->SetMultiplierForTrachea(mArgsInfo.multiplierForTrachea_arg);
   f->SetThresholdStepSizeForTrachea(mArgsInfo.thresholdStepSizeForTrachea_arg);
+  f->SetTracheaSeedAlgorithm(mArgsInfo.type_arg);
+  f->SetNumSlices(mArgsInfo.numSlices_arg);
+  f->SetMaxElongation(mArgsInfo.maxElongation_arg);
+  f->SetSeedPreProcessingThreshold(mArgsInfo.seedPreProcessingThreshold_arg);
 
   typename FilterType::InputImageIndexType s;
   if (mArgsInfo.seed_given) {
@@ -102,11 +106,17 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   
   f->SetOpenCloseFlag(mArgsInfo.openclose_flag);
   f->SetOpenCloseRadius(mArgsInfo.opencloseRadius_arg);
+  f->SetAutoCrop(!mArgsInfo.noAutoCrop_flag);
   
   if (mArgsInfo.doNotFillHoles_given)
     f->SetFillHolesFlag(false);
   else
     f->SetFillHolesFlag(true);
+
+  if (mArgsInfo.doNotSeparateLungs_given)
+    f->SetSeparateLungsFlag(false);
+  else
+    f->SetSeparateLungsFlag(true);
 }
 //--------------------------------------------------------------------