X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLungGenericFilter.txx;h=b76b365e12ef34dca1af9e8fc50c4e8090b5e1f9;hb=a3398f04a3b80b28f577ac3f0678f36f2f80ec75;hp=e103310e1efe7d89c455bc28003386afd88a1dc5;hpb=765020625fbc092d283e221e36c83e60a1844cb7;p=clitk.git

diff --git a/segmentation/clitkExtractLungGenericFilter.txx b/segmentation/clitkExtractLungGenericFilter.txx
index e103310..b76b365 100644
--- a/segmentation/clitkExtractLungGenericFilter.txx
+++ b/segmentation/clitkExtractLungGenericFilter.txx
@@ -89,6 +89,10 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetUpperThresholdForTrachea(mArgsInfo.upperThresholdForTrachea_arg);
   f->SetMultiplierForTrachea(mArgsInfo.multiplierForTrachea_arg);
   f->SetThresholdStepSizeForTrachea(mArgsInfo.thresholdStepSizeForTrachea_arg);
+  f->SetTracheaSeedAlgorithm(mArgsInfo.type_arg);
+  f->SetNumSlices(mArgsInfo.numSlices_arg);
+  f->SetMaxElongation(mArgsInfo.maxElongation_arg);
+  f->SetSeedPreProcessingThreshold(mArgsInfo.seedPreProcessingThreshold_arg);
 
   typename FilterType::InputImageIndexType s;
   if (mArgsInfo.seed_given) {
@@ -102,11 +106,17 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   
   f->SetOpenCloseFlag(mArgsInfo.openclose_flag);
   f->SetOpenCloseRadius(mArgsInfo.opencloseRadius_arg);
+  f->SetAutoCrop(!mArgsInfo.noAutoCrop_flag);
   
   if (mArgsInfo.doNotFillHoles_given)
     f->SetFillHolesFlag(false);
   else
     f->SetFillHolesFlag(true);
+
+  if (mArgsInfo.doNotSeparateLungs_given)
+    f->SetSeparateLungsFlag(false);
+  else
+    f->SetSeparateLungsFlag(true);
 }
 //--------------------------------------------------------------------