X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLymphStations.ggo;h=313851473863866fbd27033961ef12deff6073b3;hb=3c86758765bc9bcba20d439424bcf97091b5af6f;hp=96ac9940799a7ed377e47cdced452bca33e571b4;hpb=6194949c0beb1589904e22381b9aba1bbface172;p=clitk.git

diff --git a/segmentation/clitkExtractLymphStations.ggo b/segmentation/clitkExtractLymphStations.ggo
index 96ac994..3138514 100644
--- a/segmentation/clitkExtractLymphStations.ggo
+++ b/segmentation/clitkExtractLymphStations.ggo
@@ -18,6 +18,16 @@ option "afdb"          a	"Input Anatomical Feature DB"     string  	no
 option "input"         i	"Input filename"                  string  	no
 option "output"        o 	"Output lungs mask filename"      string 	no
 option "station"       - 	"Force to compute station even if already exist in the DB"      string 	no multiple
+option "nosupport"     -        "Do not recompute the station supports if already available"   flag off
+
+
+section "Options for Station 3A"
+option "S3A_ft_SVC"              - "Fuzzy Threshold for NotPost to SVC"         double default="0.5" no 
+option "S3A_ft_Bones"            - "Fuzzy Threshold for Post to Bones"          double default="0.5" no 
+option "S3A_t_Bones"             - "Binary HU Threshold for bones"              double default="250" no 
+option "S3A_ft_Aorta"            - "Fuzzy Threshold for NotPost to Aorta"       double default="0.5" no 
+option "S3A_ft_SubclavianArtery" - "Fuzzy Threshold for Ant to SubclavianArtery" double default="0.2" no 
+
 
 section "Options for Station 8"
 option "S8_esophagusDilatationForAnt"   - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
@@ -33,10 +43,6 @@ option "S7_ft_LeftPulmonaryArtery"        - "Fuzzy Threshold for LeftPulmonaryAr
 option "S7_ft_SVC"                        - "Fuzzy Threshold for SVC" double default="0.2" no 
 option "S7_UseMostInferiorPartOnly"    - "Inferior separation with S8."  flag off
 
-section "Options for Station 3A"
-option "S3A_ft_Sternum"          - "Fuzzy Threshold for Post to Sternum" double default="0.5" no 
-option "S3A_ft_SubclavianArtery" - "Fuzzy Threshold for Ant to SubclavianArtery" double default="0.2" no 
-
 section "Options for Station 2RL"
 option "S2RL_ft_CommonCarotidArtery"   - "Threshold for NotAntTo to CommonCarotidArtery"   double default="0.7" no 
 option "S2RL_ft_BrachioCephalicTrunk"  - "Threshold for NotAntTo to BrachioCephalicTrunk"  double default="0.7" no