X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLymphStations.ggo;h=313851473863866fbd27033961ef12deff6073b3;hb=3c86758765bc9bcba20d439424bcf97091b5af6f;hp=bbaa460ac3eaa3e1635022b32d3cd246ca279403;hpb=d30d301ddbebb5f290f8d9c0104dc6448ea531e1;p=clitk.git

diff --git a/segmentation/clitkExtractLymphStations.ggo b/segmentation/clitkExtractLymphStations.ggo
index bbaa460..3138514 100644
--- a/segmentation/clitkExtractLymphStations.ggo
+++ b/segmentation/clitkExtractLymphStations.ggo
@@ -17,11 +17,36 @@ section "I/O"
 option "afdb"          a	"Input Anatomical Feature DB"     string  	no
 option "input"         i	"Input filename"                  string  	no
 option "output"        o 	"Output lungs mask filename"      string 	no
+option "station"       - 	"Force to compute station even if already exist in the DB"      string 	no multiple
+option "nosupport"     -        "Do not recompute the station supports if already available"   flag off
+
+
+section "Options for Station 3A"
+option "S3A_ft_SVC"              - "Fuzzy Threshold for NotPost to SVC"         double default="0.5" no 
+option "S3A_ft_Bones"            - "Fuzzy Threshold for Post to Bones"          double default="0.5" no 
+option "S3A_t_Bones"             - "Binary HU Threshold for bones"              double default="250" no 
+option "S3A_ft_Aorta"            - "Fuzzy Threshold for NotPost to Aorta"       double default="0.5" no 
+option "S3A_ft_SubclavianArtery" - "Fuzzy Threshold for Ant to SubclavianArtery" double default="0.2" no 
+
 
 section "Options for Station 8"
-option "maxAntSpine" - "Distance max to anterior part of the spine in mm"  double no default="10"
-option "esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
-option "esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
-option "fuzzyThresholdForS8" - "Threshold for 'Post' to dilated Esophagus" double default="0.5" no 
+option "S8_esophagusDilatationForAnt"   - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
+option "S8_esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
+option "S8_ft_Esophagus"                - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no 
 
+section "Options for Station 7"
+option "S7_ft_Bronchi"                    - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no 
+option "S7_ft_LeftSuperiorPulmonaryVein"  - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no 
+option "S7_ft_RightSuperiorPulmonaryVein" - "Fuzzy Threshold for RightSuperiorPulmonaryVein" double default="0.2" no 
+option "S7_ft_RightPulmonaryArtery"       - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no 
+option "S7_ft_LeftPulmonaryArtery"        - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no 
+option "S7_ft_SVC"                        - "Fuzzy Threshold for SVC" double default="0.2" no 
+option "S7_UseMostInferiorPartOnly"    - "Inferior separation with S8."  flag off
 
+section "Options for Station 2RL"
+option "S2RL_ft_CommonCarotidArtery"   - "Threshold for NotAntTo to CommonCarotidArtery"   double default="0.7" no 
+option "S2RL_ft_BrachioCephalicTrunk"  - "Threshold for NotAntTo to BrachioCephalicTrunk"  double default="0.7" no 
+option "S2RL_ft_BrachioCephalicVein"   - "Threshold for NotAntTo to BrachioCephalicVein"   double default="0.3" no 
+option "S2RL_ft_Aorta"                 - "Threshold for RightTo  to Aorta"                 double default="0.7" no 
+option "S2RL_ft_SubclavianArteryRight" - "Threshold for NotLeft  to SubclavianArteryRight" double default="0.5" no 
+option "S2RL_ft_SubclavianArteryLeft"  - "Threshold for NotRight to SubclavianArteryLeft"  double default="0.8" no