X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLymphStations.ggo;h=457f64e933d19174c37db836b435de6be1a99dc0;hb=5a7da4aedae5c204bc55c187717193e5950f9a44;hp=313851473863866fbd27033961ef12deff6073b3;hpb=c4de479fec231c7d53555dcd21d308f06aad17ec;p=clitk.git diff --git a/segmentation/clitkExtractLymphStations.ggo b/segmentation/clitkExtractLymphStations.ggo index 3138514..457f64e 100644 --- a/segmentation/clitkExtractLymphStations.ggo +++ b/segmentation/clitkExtractLymphStations.ggo @@ -3,50 +3,46 @@ package "clitkExtractLymphStations" version "1.0" purpose "Extract LymphStations with help of TODO" -option "config" - "Config file" string no -option "imagetypes" - "Display allowed image types" flag off -option "verbose" v "Verbose" flag off -option "verboseStep" - "Verbose each step" flag off -option "writeStep" w "Write image at each step" flag off -option "verboseOption" - "Display options values" flag off -option "verboseWarningOff" - "Do not display warning" flag off -option "verboseMemory" - "Display memory usage" flag off +option "config" - "Config file" string no +option "imagetypes" - "Display allowed image types" flag off +option "verbose" v "Verbose" flag off +option "verboseStep" - "Verbose each step" flag off +option "writeStep" w "Write image at each step" flag off +option "verboseOption" - "Display options values" flag off +option "verboseWarningOff" - "Do not display warning" flag off +option "verboseMemory" - "Display memory usage" flag off section "I/O" -option "afdb" a "Input Anatomical Feature DB" string no -option "input" i "Input filename" string no -option "output" o "Output lungs mask filename" string no -option "station" - "Force to compute station even if already exist in the DB" string no multiple -option "nosupport" - "Do not recompute the station supports if already available" flag off +option "afdb" a "Input Anatomical Feature DB" string no +option "afdb_path" p "Input path for image in AFDB" string default="./" no +option "input" i "Input filename" string no +option "support_limits" - "Filename to read the support limits" string yes +option "check_support_limits" - "Display stat on the support limits" flag off +option "output" o "Output lungs mask filename" string no +section "Options for all stations" +option "force_support" - "Force to compute all supports even if already available" flag off +option "station" - "Force to compute this station even if already exist in the DB" string no multiple +option "relpos" - "List of filenames for relativeposition operations" string no multiple -section "Options for Station 3A" -option "S3A_ft_SVC" - "Fuzzy Threshold for NotPost to SVC" double default="0.5" no -option "S3A_ft_Bones" - "Fuzzy Threshold for Post to Bones" double default="0.5" no -option "S3A_t_Bones" - "Binary HU Threshold for bones" double default="250" no -option "S3A_ft_Aorta" - "Fuzzy Threshold for NotPost to Aorta" double default="0.5" no -option "S3A_ft_SubclavianArtery" - "Fuzzy Threshold for Ant to SubclavianArtery" double default="0.2" no +# section "Options for Station 3A" +# section "Options for Station 2RL" +# section "Options for Station 1RL" + section "Options for Station 8" -option "S8_esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple +option "S8_esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple option "S8_esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple -option "S8_ft_Esophagus" - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no +option "S8_ft_Esophagus" - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no section "Options for Station 7" -option "S7_ft_Bronchi" - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no -option "S7_ft_LeftSuperiorPulmonaryVein" - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no +option "S7_ft_Bronchi" - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no +option "S7_ft_LeftSuperiorPulmonaryVein" - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no option "S7_ft_RightSuperiorPulmonaryVein" - "Fuzzy Threshold for RightSuperiorPulmonaryVein" double default="0.2" no -option "S7_ft_RightPulmonaryArtery" - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no -option "S7_ft_LeftPulmonaryArtery" - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no -option "S7_ft_SVC" - "Fuzzy Threshold for SVC" double default="0.2" no -option "S7_UseMostInferiorPartOnly" - "Inferior separation with S8." flag off - -section "Options for Station 2RL" -option "S2RL_ft_CommonCarotidArtery" - "Threshold for NotAntTo to CommonCarotidArtery" double default="0.7" no -option "S2RL_ft_BrachioCephalicTrunk" - "Threshold for NotAntTo to BrachioCephalicTrunk" double default="0.7" no -option "S2RL_ft_BrachioCephalicVein" - "Threshold for NotAntTo to BrachioCephalicVein" double default="0.3" no -option "S2RL_ft_Aorta" - "Threshold for RightTo to Aorta" double default="0.7" no -option "S2RL_ft_SubclavianArteryRight" - "Threshold for NotLeft to SubclavianArteryRight" double default="0.5" no -option "S2RL_ft_SubclavianArteryLeft" - "Threshold for NotRight to SubclavianArteryLeft" double default="0.8" no +option "S7_ft_RightPulmonaryArtery" - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no +option "S7_ft_LeftPulmonaryArtery" - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no +option "S7_ft_SVC" - "Fuzzy Threshold for SVC" double default="0.2" no +option "S7_UseMostInferiorPartOnly" - "Inferior separation with S8." flag off +