X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLymphStations.ggo;h=c19c607120f51dd09ec96a1d1254d335d1071b43;hb=88b91aa3b3d43bb047dc2fe9637e4361405b3d38;hp=3e493a1b46fc38bc1983d6e043fdb84968cb7976;hpb=df08bfa3c4c20736f7194764643e7104eed63be9;p=clitk.git

diff --git a/segmentation/clitkExtractLymphStations.ggo b/segmentation/clitkExtractLymphStations.ggo
index 3e493a1..c19c607 100644
--- a/segmentation/clitkExtractLymphStations.ggo
+++ b/segmentation/clitkExtractLymphStations.ggo
@@ -10,19 +10,19 @@ option "verboseStep"    -  "Verbose each step"		  flag		off
 option "writeStep"      w  "Write image at each step"	  flag		off
 option "verboseOption"  -  "Display options values"       flag          off
 option "verboseWarningOff" -  "Do not display warning"    flag          off
+option "verboseMemory"  -  "Display memory usage"         flag          off
 
 section "I/O"
 
 option "afdb"          a	"Input Anatomical Feature DB"     string  	no
-option "mediastinum"   m	"Input mediastinum mask filename" string  	yes
-option "trachea"       t	"Input trachea mask filename"	  string  	yes
-option "output"        o 	"Output lungs mask filename"      string 	yes
-
-option "carenaZposition"   		c	"Sup-Inf position of the carena (in mm, with origin)" double no
-option "middleLobeBronchusZposition"   	b	"Sup-Inf position of the middle lobe bronchus (in mm, with origin)" double no
-option "spacing"     -	"Intermediate resampling spacing"         double no default="6"
-option "fuzzy1"	     -	"Fuzzy relative position threshold"	  double no default="0.6"
-
-
-
+option "input"         i	"Input filename"                  string  	no
+option "output"        o 	"Output lungs mask filename"      string 	no
+option "station"       - 	"Force to compute station even if already exist in the DB"      string 	no multiple
+
+section "Options for Station 8"
+option "maxAntSpine" - "Distance max to anterior part of the spine in mm"  double no default="10"
+option "esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
+option "esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
+option "fuzzyThresholdForS8" - "Threshold for 'Post' to dilated Esophagus" double default="0.5" no 
+option "injectedThresholdForS8" - "Threshold injected areas in the ct" double default="150" no