X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLymphStationsGenericFilter.txx;h=03fdb29c9962aa652d863f765632e2c69abc0049;hb=b97f5d36faa590eccb7c8008ae8be54acb6849ea;hp=9dfa850f67eb7e20683f6f38521b78ef2e5231d9;hpb=5e2af376544fce0c6dc46bb3c3227d35b501c1f1;p=clitk.git

diff --git a/segmentation/clitkExtractLymphStationsGenericFilter.txx b/segmentation/clitkExtractLymphStationsGenericFilter.txx
index 9dfa850..03fdb29 100644
--- a/segmentation/clitkExtractLymphStationsGenericFilter.txx
+++ b/segmentation/clitkExtractLymphStationsGenericFilter.txx
@@ -63,10 +63,77 @@ void
 clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::
 SetOptionsFromArgsInfoToFilter(FilterType * f)
 {
-  f->SetVerboseOption(mArgsInfo.verbose_flag);
-  f->SetVerboseStep(mArgsInfo.verboseStep_flag);
-  f->SetWriteStep(mArgsInfo.writeStep_flag);
+  f->SetVerboseOptionFlag(mArgsInfo.verbose_flag);
+  f->SetVerboseStepFlag(mArgsInfo.verboseStep_flag);
+  f->SetWriteStepFlag(mArgsInfo.writeStep_flag);
+  f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
   f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+
+  f->SetComputeStationsSupportsFlag(!mArgsInfo.nosupport_flag);
+
+  // Station 8
+  //f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.S8_maxAntSpine_arg);
+  f->SetFuzzyThreshold("8", "Esophagus", mArgsInfo.S8_ft_Esophagus_arg);
+  //  f->SetInjectedThresholdForS8(mArgsInfo.tS8_injectedThreshold_arg);
+
+  // Check multiple options for radius dilatation
+  /*
+    typename FilterType::MaskImagePointType p;
+    SetMultipleOptionMacro(mArgsInfo, esophagusDilatation, 3, p);
+    default ? = set before
+    exception if fail
+   */
+  typename FilterType::MaskImagePointType p;
+  p[0] = 7; p[1] = 5; p[2] = 0; // default value
+  if (mArgsInfo.S8_esophagusDilatationForAnt_given == 3) {
+    for(uint i=0; i<3; i++)
+      p[i] = mArgsInfo.S8_esophagusDilatationForAnt_arg[i];
+  }
+  else {
+    if (mArgsInfo.S8_esophagusDilatationForAnt_given == 1) {
+      for(uint i=0; i<3; i++)
+        p[i] = mArgsInfo.S8_esophagusDilatationForAnt_arg[0];
+    }
+  }
+  f->SetEsophagusDiltationForAnt(p);
+  
+  p[0] = 5; p[1] = 10; p[2] = 1; // default value
+  if (mArgsInfo.S8_esophagusDilatationForRight_given == 3) {
+    for(uint i=0; i<3; i++)
+      p[i] = mArgsInfo.S8_esophagusDilatationForRight_arg[i];
+  }
+  else {
+    if (mArgsInfo.S8_esophagusDilatationForRight_given == 1) {
+      for(uint i=0; i<3; i++)
+        p[i] = mArgsInfo.S8_esophagusDilatationForRight_arg[0];
+    }
+  }
+  f->SetEsophagusDiltationForRight(p);  
+  
+  for(uint i=0; i<mArgsInfo.station_given; i++)
+    f->AddComputeStation(mArgsInfo.station_arg[i]);
+
+  // Station 3A
+  f->SetFuzzyThreshold("3A", "SVC", mArgsInfo.S3A_ft_SVC_arg);
+  f->SetFuzzyThreshold("3A", "Aorta", mArgsInfo.S3A_ft_Aorta_arg);
+  f->SetFuzzyThreshold("3A", "SubclavianArtery", mArgsInfo.S3A_ft_SubclavianArtery_arg);
+  
+  // Station 7
+  f->SetFuzzyThreshold("7", "Bronchi", mArgsInfo.S7_ft_Bronchi_arg);
+  f->SetFuzzyThreshold("7", "LeftSuperiorPulmonaryVein", mArgsInfo.S7_ft_LeftSuperiorPulmonaryVein_arg);
+  f->SetFuzzyThreshold("7", "RightSuperiorPulmonaryVein", mArgsInfo.S7_ft_RightSuperiorPulmonaryVein_arg);
+  f->SetFuzzyThreshold("7", "RightPulmonaryArtery", mArgsInfo.S7_ft_RightPulmonaryArtery_arg);
+  f->SetFuzzyThreshold("7", "LeftPulmonaryArtery", mArgsInfo.S7_ft_LeftPulmonaryArtery_arg);
+  f->SetFuzzyThreshold("7", "SVC", mArgsInfo.S7_ft_SVC_arg);
+  f->SetS7_UseMostInferiorPartOnlyFlag(mArgsInfo.S7_UseMostInferiorPartOnly_flag);
+
+  // Station 2RL
+  f->SetFuzzyThreshold("2RL", "CommonCarotidArtery", mArgsInfo.S2RL_ft_CommonCarotidArtery_arg);
+  f->SetFuzzyThreshold("2RL", "BrachioCephalicTrunk", mArgsInfo.S2RL_ft_BrachioCephalicTrunk_arg);
+  f->SetFuzzyThreshold("2RL", "BrachioCephalicVein", mArgsInfo.S2RL_ft_BrachioCephalicVein_arg);
+  f->SetFuzzyThreshold("2RL", "Aorta", mArgsInfo.S2RL_ft_Aorta_arg);
+  f->SetFuzzyThreshold("2RL", "SubclavianArteryLeft", mArgsInfo.S2RL_ft_SubclavianArteryLeft_arg);
+  f->SetFuzzyThreshold("2RL", "SubclavianArteryRight", mArgsInfo.S2RL_ft_SubclavianArteryRight_arg);
 }
 //--------------------------------------------------------------------