X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLymphStationsGenericFilter.txx;h=a27b4a629e41e2893b95513646ef599f5a790485;hb=b2fd61648c05339dd302e102361c22c4b11d48ff;hp=8b6167ec9090ca4fc1d17dcad7f33dd0b4a21767;hpb=6194949c0beb1589904e22381b9aba1bbface172;p=clitk.git

diff --git a/segmentation/clitkExtractLymphStationsGenericFilter.txx b/segmentation/clitkExtractLymphStationsGenericFilter.txx
index 8b6167e..a27b4a6 100644
--- a/segmentation/clitkExtractLymphStationsGenericFilter.txx
+++ b/segmentation/clitkExtractLymphStationsGenericFilter.txx
@@ -68,6 +68,10 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetWriteStepFlag(mArgsInfo.writeStep_flag);
   f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
   f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+  if (mArgsInfo.afdb_path_given) f->SetAFDBPath(mArgsInfo.afdb_path_arg);  
+  f->SetForceSupportsFlag(mArgsInfo.force_support_flag);
+  f->SetSupportLimitsFilename(mArgsInfo.support_limits_arg);
+  f->SetCheckSupportFlag(mArgsInfo.check_support_limits_flag);
 
   // Station 8
   //f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.S8_maxAntSpine_arg);
@@ -111,6 +115,8 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   for(uint i=0; i<mArgsInfo.station_given; i++)
     f->AddComputeStation(mArgsInfo.station_arg[i]);
 
+  // Station 3A
+  
   // Station 7
   f->SetFuzzyThreshold("7", "Bronchi", mArgsInfo.S7_ft_Bronchi_arg);
   f->SetFuzzyThreshold("7", "LeftSuperiorPulmonaryVein", mArgsInfo.S7_ft_LeftSuperiorPulmonaryVein_arg);
@@ -120,17 +126,13 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetFuzzyThreshold("7", "SVC", mArgsInfo.S7_ft_SVC_arg);
   f->SetS7_UseMostInferiorPartOnlyFlag(mArgsInfo.S7_UseMostInferiorPartOnly_flag);
 
-  // Station 3A
-  f->SetFuzzyThreshold("3A", "Sternum", mArgsInfo.S3A_ft_Sternum_arg);
-  f->SetFuzzyThreshold("3A", "SubclavianArtery", mArgsInfo.S3A_ft_SubclavianArtery_arg);
-  
   // Station 2RL
-  f->SetFuzzyThreshold("2RL", "CommonCarotidArtery", mArgsInfo.S2RL_ft_CommonCarotidArtery_arg);
-  f->SetFuzzyThreshold("2RL", "BrachioCephalicTrunk", mArgsInfo.S2RL_ft_BrachioCephalicTrunk_arg);
-  f->SetFuzzyThreshold("2RL", "BrachioCephalicVein", mArgsInfo.S2RL_ft_BrachioCephalicVein_arg);
-  f->SetFuzzyThreshold("2RL", "Aorta", mArgsInfo.S2RL_ft_Aorta_arg);
-  f->SetFuzzyThreshold("2RL", "SubclavianArteryLeft", mArgsInfo.S2RL_ft_SubclavianArteryLeft_arg);
-  f->SetFuzzyThreshold("2RL", "SubclavianArteryRight", mArgsInfo.S2RL_ft_SubclavianArteryRight_arg);
+
+  // Station 1RL
+
+  // Set RelativePositionList filenames
+  for(uint i=0; i<mArgsInfo.relpos_given; i++) 
+    f->AddRelativePositionListFilename(mArgsInfo.relpos_arg[i]);
 }
 //--------------------------------------------------------------------