X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractLymphStationsGenericFilter.txx;h=ffa6c3c87e6a668373182b87b629a3a47040fd75;hb=417fa02691e61ff52abb5ce74c81d767755aca7e;hp=ae1106a49fbd424a5a4ee69066e4d025b4039b25;hpb=bf4928c59a1d39f53fe03deb4b73ecb7e1cf214b;p=clitk.git

diff --git a/segmentation/clitkExtractLymphStationsGenericFilter.txx b/segmentation/clitkExtractLymphStationsGenericFilter.txx
index ae1106a..ffa6c3c 100644
--- a/segmentation/clitkExtractLymphStationsGenericFilter.txx
+++ b/segmentation/clitkExtractLymphStationsGenericFilter.txx
@@ -68,8 +68,11 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetWriteStepFlag(mArgsInfo.writeStep_flag);
   f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
   f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+
+  // Station 8
   f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.maxAntSpine_arg);
-  f->SetFuzzyThresholdForS8(mArgsInfo.fuzzyThresholdForS8_arg);
+  f->SetFuzzyThreshold("8", "Esophagus", mArgsInfo.tS8_Esophagus_arg);
+  f->SetInjectedThresholdForS8(mArgsInfo.injectedThresholdForS8_arg);
 
   // Check multiple options for radius dilatation
   /*
@@ -107,6 +110,26 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   
   for(uint i=0; i<mArgsInfo.station_given; i++)
     f->AddComputeStation(mArgsInfo.station_arg[i]);
+
+  // Station 7
+  f->SetFuzzyThreshold("7", "Bronchi", mArgsInfo.tS7_Bronchi_arg);
+  f->SetFuzzyThreshold("7", "LeftSuperiorPulmonaryVein", mArgsInfo.tS7_LeftSuperiorPulmonaryVein_arg);
+  f->SetFuzzyThreshold("7", "RightSuperiorPulmonaryVein", mArgsInfo.tS7_RightSuperiorPulmonaryVein_arg);
+  f->SetFuzzyThreshold("7", "RightPulmonaryArtery", mArgsInfo.tS7_RightPulmonaryArtery_arg);
+  f->SetFuzzyThreshold("7", "LeftPulmonaryArtery", mArgsInfo.tS7_LeftPulmonaryArtery_arg);
+  f->SetFuzzyThreshold("7", "SVC", mArgsInfo.tS7_SVC_arg);
+
+  // Station 3A
+  f->SetFuzzyThreshold("3A", "Sternum", mArgsInfo.tS3A_Sternum_arg);
+  f->SetFuzzyThreshold("3A", "SubclavianArtery", mArgsInfo.tS3A_SubclavianArtery_arg);
+  
+  // Station 2RL
+  f->SetFuzzyThreshold("2RL", "CommonCarotidArtery", mArgsInfo.tS2RL_CommonCarotidArtery_arg);
+  f->SetFuzzyThreshold("2RL", "BrachioCephalicTrunk", mArgsInfo.tS2RL_BrachioCephalicTrunk_arg);
+  f->SetFuzzyThreshold("2RL", "BrachioCephalicVein", mArgsInfo.tS2RL_BrachioCephalicVein_arg);
+  f->SetFuzzyThreshold("2RL", "Aorta", mArgsInfo.tS2RL_Aorta_arg);
+  f->SetFuzzyThreshold("2RL", "SubclavianArteryLeft", mArgsInfo.tS2RL_SubclavianArteryLeft_arg);
+  f->SetFuzzyThreshold("2RL", "SubclavianArteryRight", mArgsInfo.tS2RL_SubclavianArteryRight_arg);
 }
 //--------------------------------------------------------------------