X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractMediastinum.ggo;h=bbb473dae195f85c2893ffd5ef71cab2530bf522;hb=d8491513127692da553a367ac5460a63a45f7129;hp=f5f740b93e4e7d7842cc55eef0251be4e1aee9e1;hpb=d30d301ddbebb5f290f8d9c0104dc6448ea531e1;p=clitk.git

diff --git a/segmentation/clitkExtractMediastinum.ggo b/segmentation/clitkExtractMediastinum.ggo
index f5f740b..bbb473d 100644
--- a/segmentation/clitkExtractMediastinum.ggo
+++ b/segmentation/clitkExtractMediastinum.ggo
@@ -15,22 +15,24 @@ option "verboseMemory"  -  "Display memory usage"         flag          off
 section "I/O"
 
 option "input"     i	"Input CT filename"               string  	yes
-option "afdb"      a	"Input Anatomical Feature DB"     string  	no
+option "output"    o 	"Output lungs mask filename"      string 	yes
+option "afdb"      a	"Input Anatomical Feature DB (needs Patient, Lungs, Trachea, VertebralBody)"     string  	no
 option "useBones"  -    "If set : do use bones mask (when image is not injected)"  flag	off
+option "maxAntSpine"  - "Distance max to anterior part of the VertebralBody (spine) in mm"  double no default="10"
 
-option "output"        o 	"Output lungs mask filename"      string 	yes
-
-section "Step 1 : Left/Right limits with lungs"
 option "spacing"     -	"Intermediate resampling spacing"         double no default="6"
-option "fuzzy1"	     -	"Fuzzy relative position threshold"	  double no default="0.5"
+option "ft_LR_lungs"	     -	"RelPos LR limits lungs"	  double no default="0.3"
+option "ft_bones"	     -	"RelPos AP limits bones"	  double no default="0.6"
+option "ft_inf_lungs"	     -	"RelPos inf limits bones"	  double no default="0.05"
+option "ft_ant_sternum"	     -	"RelPos ant limits sternum"	  double no default="0.5"
+
+#section "Step 1 : Left/Right limits with lungs"
 
 section "Step 2 : Ant/Post limits with bones"
-option "fuzzy2"	     -	"Fuzzy relative position threshold"	  double no default="0.6"
-option "antSpine"     -	"Distance max to anterior part of the spine in mm"  double no default="10"
+#option "antSpine"     -	"Distance max to anterior part of the spine in mm"  double no default="10"
 
-section "Step 3 : Inf limits with Lung"
-option "fuzzy3"	     -	"Fuzzy relative position threshold"	  double no default="0.05"
+#section "Step 3 : Inf limits with Lung"
 
-section "Step x : threshold for removing bones and injected parts"
-option "upper"  - "Upper threshold" double no default="150"
-option "lower"  - "Lower threshold" double no default="-200"
\ No newline at end of file
+# section "Step x : threshold for removing bones and injected parts"
+# option "upper"  - "Upper threshold" double no default="150"
+# option "lower"  - "Lower threshold" double no default="-200"
\ No newline at end of file