X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractMediastinum.ggo;h=bd2bbe4d8e6c3a3a3c52ba8a2a854bd2795e1438;hb=595624eb4297e747630105d45017de69733caef2;hp=48139f50b63dc1ff7a9117dd64b9fb46bdf92f0e;hpb=5e2af376544fce0c6dc46bb3c3227d35b501c1f1;p=clitk.git

diff --git a/segmentation/clitkExtractMediastinum.ggo b/segmentation/clitkExtractMediastinum.ggo
index 48139f5..bd2bbe4 100644
--- a/segmentation/clitkExtractMediastinum.ggo
+++ b/segmentation/clitkExtractMediastinum.ggo
@@ -10,26 +10,15 @@ option "verboseStep"    -  "Verbose each step"		  flag		off
 option "writeStep"      w  "Write image at each step"	  flag		off
 option "verboseOption"  -  "Display options values"       flag          off
 option "verboseWarningOff" -  "Do not display warning"    flag          off
+option "verboseMemory"  -  "Display memory usage"         flag          off
 
 section "I/O"
 
 option "input"     i	"Input CT filename"               string  	yes
-option "afdb"      a	"Input Anatomical Feature DB"     string  	no
-option "useBones"  -    "If set : do use bones mask (when image is not injected)"  flag	off
-
-option "output"        o 	"Output lungs mask filename"      string 	yes
-
-section "Step 1 : Left/Right limits with lungs"
-option "spacing"     -	"Intermediate resampling spacing"         double no default="6"
-option "fuzzy1"	     -	"Fuzzy relative position threshold"	  double no default="0.5"
+option "output"    o 	"Output lungs mask filename"      string 	yes
+option "afdb"      a	"Input Anatomical Feature DB (needs Patient, Lungs, Trachea, VertebralBody)"     string  	no
+option "relpos" - "List of filenames for relativeposition operations" string no multiple
 
-section "Step 2 : Ant/Post limits with bones"
-option "fuzzy2"	     -	"Fuzzy relative position threshold"	  double no default="0.6"
-option "antSpine"     -	"Distance max to anterior part of the spine in mm"  double no default="10"
-
-section "Step 3 : Inf limits with Lung"
-option "fuzzy3"	     -	"Fuzzy relative position threshold"	  double no default="0.05"
+option "useBones"  -    "If set : do use bones mask (when image is not injected)"  flag	off
+option "maxAntSpine"  - "Distance max to anterior part of the VertebralBody (spine) in mm"  double no default="10"
 
-section "Step x : threshold for removing bones and injected parts"
-option "upper"  - "Upper threshold" double no default="150"
-option "lower"  - "Lower threshold" double no default="-200"
\ No newline at end of file