X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkExtractMediastinum.ggo;h=bd2bbe4d8e6c3a3a3c52ba8a2a854bd2795e1438;hb=595624eb4297e747630105d45017de69733caef2;hp=92bff77da7d6461c2192693de213b5ede452b53f;hpb=e23e998e1f27aaf0a4a65b019cdfe73784206067;p=clitk.git diff --git a/segmentation/clitkExtractMediastinum.ggo b/segmentation/clitkExtractMediastinum.ggo index 92bff77..bd2bbe4 100644 --- a/segmentation/clitkExtractMediastinum.ggo +++ b/segmentation/clitkExtractMediastinum.ggo @@ -10,28 +10,15 @@ option "verboseStep" - "Verbose each step" flag off option "writeStep" w "Write image at each step" flag off option "verboseOption" - "Display options values" flag off option "verboseWarningOff" - "Do not display warning" flag off +option "verboseMemory" - "Display memory usage" flag off section "I/O" -option "patient" p "Input patient mask filename" string yes -option "patientBG" - "Patient Background" int default="0" no -option "bones" b "Input bones mask filename" string yes -option "bonesBG" - "Bones Background" int default="0" no -option "lung" l "Input lung mask filename" string yes -option "lungBG" - "Lung Background" int default="0" no -option "lungLeft" - "Lung Left value" int default="1" no -option "lungRight" - "Lung Right value" int default="2" no -option "trachea" t "Input trachea mask filename" string yes -option "tracheaBG" - "Trachea Background" int default="0" no +option "input" i "Input CT filename" string yes +option "output" o "Output lungs mask filename" string yes +option "afdb" a "Input Anatomical Feature DB (needs Patient, Lungs, Trachea, VertebralBody)" string no +option "relpos" - "List of filenames for relativeposition operations" string no multiple -option "output" o "Output lungs mask filename" string yes +option "useBones" - "If set : do use bones mask (when image is not injected)" flag off +option "maxAntSpine" - "Distance max to anterior part of the VertebralBody (spine) in mm" double no default="10" -section "Step 1 : Left/Right limits with lungs" -option "spacing" - "Intermediate resampling spacing" double no default="6" -option "fuzzy1" - "Fuzzy relative position threshold" double no default="0.4" - -section "Step 2 : Ant/Post limits with bones" -option "fuzzy2" - "Fuzzy relative position threshold" double no default="0.6" - -section "Step 3 : Inf limits with Lung" -option "fuzzy3" - "Fuzzy relative position threshold" double no default="0.2"