X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=blobdiff_plain;f=segmentation%2FclitkMotionMask.ggo;h=b9e9d1cd7fc0fbbbc9656c0e9454fe9a1c1b03ed;hb=cc9072c5acc18200fb3e34d22b4c1c2f823d18b1;hp=66593bd9a5de33689b668c73c536e818e05db1fc;hpb=41e04b9629105d52b2241a1f7008ffd440ea7e46;p=clitk.git

diff --git a/segmentation/clitkMotionMask.ggo b/segmentation/clitkMotionMask.ggo
old mode 100755
new mode 100644
index 66593bd..b9e9d1c
--- a/segmentation/clitkMotionMask.ggo
+++ b/segmentation/clitkMotionMask.ggo
@@ -1,5 +1,5 @@
 #File clitkMotionMask.ggo
-Package "clitkMotionMask"
+package "clitkMotionMask"
 version "1.0"
 purpose "From an input CT image (HU), extract feature images (air, ribs and lungs) and calculate the motion mask using levelsets, Vandemeulebroucke2010, ICCR. More elaborate methods for extracting the feature images have been incude in clitkExtract*, with *=Lungs,Bones,Patient."
 
@@ -32,9 +32,12 @@ option "writeFeature"		-	"Write the combined feature image"			string	no
 section "Ellipsoide initialization"
 
 option	"ellips"	-	"Input ellipsoide image (=1, at half resolution)" 					   string	no
-option	"offset"	-	"Offset for ellips center from body center of gravity (default= 0,-50,0 mm)"  	   double	no	multiple
-option 	"axes"		-	"Half axes of the ellips (default= 100,30,150)"					   double 	no	multiple
 option  "writeEllips"	-	"Write the initial ellipsoide image"			string	no  
+option "writeDistMap"   - "Write the distance map"      string  no  
+#defgroup "EllipseParams" groupdesc="an option of this group is required" required
+option  "ellipseAutoDetect"  - "Auto-detect offset and axes of initial ellipse"          flag  off  
+option  "offset"  - "Offset for ellips center from body center of gravity (default= 0,-50,0 mm)"       double no  multiple
+option  "axes"    - "Half axes of the ellips (default= 100,30,150)"            double   no  multiple
 
 
 section "Ellipsoide growing"